PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00992.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 356aa    MW: 38274.7 Da    PI: 5.7205
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00992.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.7e-11149193655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        Er+RR r+++++ eLr+l+P+      +K++Ka+i   Av Y+k+Lq
  Pahal.G00992.1 149 IVSERKRRVRMKERLYELRSLVPNI-----TKMDKASIIADAVVYVKDLQ 193
                     568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.34E-13140194No hitNo description
SuperFamilySSF474595.23E-16140210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.688143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-16145209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-12149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-8149193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDMEHQLHQL LHFSPQEHLM ASPGFLAAGG GYSAHFPAGG FVEPLGADAP AGIHDGGWVV  60
EDLMQLGDEL FGGDFISVVG MGDHQPWQYD DNGGSPDDTP PSVSTDGDGS SHPGEQAGAG  120
ELATTEPHRE DPDDASPATR KRRDRSKTIV SERKRRVRMK ERLYELRSLV PNITKMDKAS  180
IIADAVVYVK DLQAHARKLK EEVAALEARP RSPAGYEQQQ QHSEHVAAAG RRLQDRGHGA  240
RVTRVGAAPV GDGRFVVTVE CERRDSVAAP LCAAVESLAG FRVESSSLVR SGPDRLVSTL  300
TLKVSEQVGA ATIGEDSVRH WVIAALLQEG FRPEATVEIS SRSACRPINW CSDAV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140155KRRDRSKTIVSERKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8350401e-76CT835040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825747.10.0transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A2S3I5X50.0A0A2S3I5X5_9POAL; Uncharacterized protein
STRINGPavir.Ga01979.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.14e-42FER-like regulator of iron uptake