PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G00991.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 354aa MW: 37976.4 Da PI: 5.1871 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.9 | 1.2e-10 | 153 | 197 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR r+++++ eLr+l+P+ +K++Ka+i Av Y+k+Lq Pahal.G00991.1 153 IVSERKRRVRMKEKLYELRSLVPNI-----TKMDKASIIADAVVYVKNLQ 197 568*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-15 | 144 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.57E-13 | 144 | 198 | No hit | No description |
PROSITE profile | PS50888 | 15.383 | 147 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-15 | 149 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-7 | 153 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-11 | 153 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034756 | Biological Process | regulation of iron ion transport | ||||
GO:0071281 | Biological Process | cellular response to iron ion | ||||
GO:0071369 | Biological Process | cellular response to ethylene stimulus | ||||
GO:0071732 | Biological Process | cellular response to nitric oxide | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MEHELLQLLH LPPQDGQDHL SVISSGFFDV HGNAHFPSSG CALFGTVAAE SGLDDDCSWV 60 EDLMQLGDKL FGDGAGPGCE DNAAGTDEGC QQQPWQCNGG SSDDPPPSMS LDGDGNPHSV 120 EQGAGELASE PHRDDGDDAS PVTRKRRDRS KTIVSERKRR VRMKEKLYEL RSLVPNITKM 180 DKASIIADAV VYVKNLQAHA RKLKEEVAAL EARPRSPRQE QQHNRRAGAA AAGRRRQQER 240 DEDSAGSTAS GARLAHVGAV QVGEGRFFVT VECERRDGVA APLCAAVESL ACFRVESSSL 300 VRSGPDRLVS TLTLKVNEQV GDAAVCEGSV VKLLVMAALL KEGFRPEATV EMS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 159 | KRRDRSKTIVSERKRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826115.1 | 0.0 | transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like isoform X1 | ||||
TrEMBL | A0A2S3I6T6 | 0.0 | A0A2S3I6T6_9POAL; Uncharacterized protein | ||||
STRING | Si010533m | 1e-171 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5546 | 30 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28160.1 | 9e-41 | FER-like regulator of iron uptake |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G00991.1 |