PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00886.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 1013aa    MW: 113360 Da    PI: 6.5534
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00886.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.14.7e-55111263117
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e ++rwlk++e++ iL+n+e++ +t+e++++p+sgsl+Lynr++ ryfr+DG++w++kkdg+tv E+he+LKvg+v++l+cyYah+e+np fqr
  Pahal.G00886.2  11 EEaRTRWLKPSEVYYILQNHERFPITHEAPRKPPSGSLFLYNRRVNRYFRRDGHTWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNPCFQR 105
                     5569******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhylev 117
                     rc+w+Le ++e+ivlv+y+ev
  Pahal.G00886.2 106 RCFWMLEPAYEHIVLVQYREV 126
                     *******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.6816132IPR005559CG-1 DNA-binding domain
SMARTSM010768.6E-699127IPR005559CG-1 DNA-binding domain
PfamPF038594.6E-4712125IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.36E-15435519IPR014756Immunoglobulin E-set
PfamPF018331.3E-7436506IPR002909IPT domain
Gene3DG3DSA:2.60.40.106.0E-7436523IPR013783Immunoglobulin-like fold
SuperFamilySSF484031.71E-16462511IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.71E-16631728IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.4E-16631726IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.937633725IPR020683Ankyrin repeat-containing domain
CDDcd002042.84E-9638725No hitNo description
PfamPF127961.6E-6649726IPR020683Ankyrin repeat-containing domain
SMARTSM002489.7E-5666695IPR002110Ankyrin repeat
PROSITE profilePS5008811.301666698IPR002110Ankyrin repeat
SMARTSM002484600705734IPR002110Ankyrin repeat
SMARTSM0001527786808IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.602787816IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.58E-6845892IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.712845874IPR000048IQ motif, EF-hand binding site
SMARTSM0001517846866IPR000048IQ motif, EF-hand binding site
PfamPF006120.015847865IPR000048IQ motif, EF-hand binding site
SMARTSM000153.7E-6867889IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.731868896IPR000048IQ motif, EF-hand binding site
PfamPF006122.6E-5869889IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1013 aa     Download sequence    Send to blast
MKGFDINVLR EEARTRWLKP SEVYYILQNH ERFPITHEAP RKPPSGSLFL YNRRVNRYFR  60
RDGHTWRRKK DGRTVGEAHE RLKVGNVDAL SCYYAHGEQN PCFQRRCFWM LEPAYEHIVL  120
VQYREVAEGR YYSSKLSNGP PESLSSLGYP HAIYGNQYLS STSGTSEGSE SHQSYSNLSS  180
VTEVSSYSGN KEYNKDGGSL LSIPELGQTC LEQTTEVYQA DNDNSKNKSG LNVALKKIAE  240
QLSLGDDEDD YIYTNQVQPL GFATNIEATD KKDDNQIKQI QPEGAQKGLG RNIAPSWEDV  300
LHSSSGLPTP SIYQSDVQYQ QNSEYHPPGS LDSSDLRIQL SAAKRFLLGP EASIDSPSSN  360
FILRNKKNGG TDILSAHESR LESSLNPDWK TKAPLTFQSN SQGSEITELL FDRGQLEPYS  420
RADTRLTLGQ IKQFNIREIS PEWAFSYEIT KVIITGDFLF DSSNLCWAVM FGDSEVPAEI  480
VQPGVLRCHT PLHSSGKLRV CITSGNREVC SEFKEFEFRS KPTSSGSSDL APSSRSLKSS  540
EELLFLAKFV RMLLLENGSS EVPDSDPQSG QCPKLRMNEE LWDRLIHELN LGCENPLSTV  600
DQIMEELLKS RLQRWLSVKL KGFNGTSSSL SKHDQGIIHL ISALGYEWAL SSVLSAGVGL  660
NFRDSNGWTA LHWAAYFGRE KMVAALLAAG ASATAVTDPT AQDPVGKTAA FLASERGHTG  720
LAGYLSEVSL TSYLASLTIE ESDVSKGSAE IEAERAVESI SQRSAQLHGG TEDELSMKDS  780
LAAVRNAAQA AARIQNAFRA FSFRKRQQKT ARLRDEYGMT QEDIDELAAA SRLYHQAHAS  840
SGQFYDKAAV SIQKKYKGWK GRKHFLNMRR NAVKIQAHVR GHQVRKKYRT IVSTVSVLEK  900
VILRWRRKGH GLRGFRAEQQ PMVGAVEEDD EEDDDFDDDE AVKVFRRQKV DQAVKEAVSR  960
VLSMVDSTEA RMQYRRMLEE FRQASAELGG SQEVTSIFDS DLEILGINNF ML*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823460.10.0calmodulin-binding transcription activator 4-like isoform X2
TrEMBLA0A2S3I6470.0A0A2S3I647_9POAL; Uncharacterized protein
STRINGPavir.Ga01952.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-145Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains