PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00823.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 329aa    MW: 35660.6 Da    PI: 8.8991
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00823.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.62.2e-2520113182
        trihelix   1 rWtkqevlaLiearremeerlr.rgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                     rWt+qe+l+Lie++r +e++ r rg+              ++ ++W++v++++r++g+ r+p+qC+++w+nl+++ykki+e+e++ +++++   +
  Pahal.G00823.1  20 RWTRQEILVLIEGKRVVERSGRgRGRgrgparvggdgaggAEPTKWAAVAEYCRRHGVDRGPVQCRKRWSNLAGDYKKIREWERGFAARKE---A 111
                     8****************99999533355778888888888********************************************9744433...3 PP

        trihelix  81 yf 82 
                      f
  Pahal.G00823.1 112 SF 113
                     34 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-52091IPR009057Homeodomain-like
PfamPF138371.0E-1020104No hitNo description
PROSITE profilePS500906.3072092IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSNAGEARGV GTGRGSRLPR WTRQEILVLI EGKRVVERSG RGRGRGRGPA RVGGDGAGGA  60
EPTKWAAVAE YCRRHGVDRG PVQCRKRWSN LAGDYKKIRE WERGFAARKE ASFWAMRNDA  120
RRERRLPGFF DREVYDILEG RAVGNAAASA ASAARPAVVD VESKEEVTAA LDCGRGADGA  180
GLFSSSEDED YQEDDAATPS PTPAPALAPE PVALPISEKT TDVPRQESSE QGTSKRKQPE  240
QMTEDSPAQC GQKRQRSDDN ASGRAAMTNL QGQLVEILDR SSQMVAAQLE AQNINSRLDR  300
EQRKEQVSSL LGVLGKVADA LYRIADKL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9493561e-165EU949356.1 Zea mays clone 402974 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826049.10.0trihelix transcription factor ASR3-like isoform X2
TrEMBLA0A2S3I6630.0A0A2S3I663_9POAL; Uncharacterized protein
STRINGSi010590m1e-161(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.16e-65Trihelix family protein