PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00808.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 274aa    MW: 28237.4 Da    PI: 4.2435
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00808.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-183687156
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  Pahal.G00808.1 36 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 87
                    5799******.**********843...4*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.61E-283695No hitNo description
PROSITE profilePS5103221.5623794IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-213794IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.4E-293794IPR001471AP2/ERF domain
SMARTSM003803.1E-3237100IPR001471AP2/ERF domain
PfamPF008479.7E-113786IPR001471AP2/ERF domain
PRINTSPR003671.5E-83849IPR001471AP2/ERF domain
PRINTSPR003671.5E-86076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MNFSSYFFSS SSSSDKKSSS SSSSKRRQQQ PDANTTRYLG VRRRPWGRYA AEIRDPATKE  60
RHWLGTFDTA EEAAVAYDRA ARSLRGARAR TNFAYPDLPP GSSVTPYLSP DLTSGDNAGQ  120
LLQPFYADPA ASLTAAAQAA NGGGGAGFGL GAGGDYASSY GYSAEDMSAL MDDLAIPDDL  180
PADDYGVDAG GAMDLTSVYG GAIGASNASA GGGGGGWCDA SELSAYGASA TASHGVYFEE  240
GYVHSPLFSP MPAADDACAD GFQLDGSSSS YYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-183893662ATERF1
3gcc_A5e-183893662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9741060.0EU974106.1 Zea mays clone 439808 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826487.10.0ethylene-responsive transcription factor LEP-like
TrEMBLA0A2S3I6A10.0A0A2S3I6A1_9POAL; Uncharacterized protein
STRINGPavir.Gb01913.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-25ERF family protein