PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G00773.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CO-like | ||||||||
Protein Properties | Length: 325aa MW: 34308.1 Da PI: 5.0322 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.2 | 7e-08 | 20 | 56 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 r C+ ++ + ++l+C+ + +lC+ C H g H Pahal.G00773.1 20 RPCDACGAEAARLYCRADAAFLCAGCDARAH-GagsrH 56 68**************************999.435667 PP | |||||||
2 | zf-B_box | 22.2 | 2.9e-07 | 59 | 102 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 + C+ +e+ ++ C+ + lC++C +H+ H+++ Pahal.G00773.1 59 VWLCEVCEHAPAAVTCRADAAALCASCDADIHSAnplarrHERQ 102 679*****************************657888888876 PP | |||||||
3 | CCT | 70.1 | 5.5e-24 | 236 | 279 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ Pahal.G00773.1 236 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 279 9****************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 4.7E-8 | 17 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.523 | 17 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.7E-6 | 20 | 56 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.47E-9 | 20 | 61 | No hit | No description |
PROSITE profile | PS50119 | 9.584 | 57 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.8E-5 | 59 | 103 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.01E-8 | 60 | 104 | No hit | No description |
SMART | SM00336 | 2.1E-8 | 62 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 9.1E-18 | 236 | 278 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.876 | 236 | 278 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MEGDETSAGG APAYWGLGAR PCDACGAEAA RLYCRADAAF LCAGCDARAH GAGSRHARVW 60 LCEVCEHAPA AVTCRADAAA LCASCDADIH SANPLARRHE RQTVAPFYGA LADAPKPFAS 120 SVAVPKAADD DGSNEAEAAS WLLPEPDHGQ KEGATTEVFF ADSDPYLDLE FARSMDDIKA 180 IGVQNGPAEL DLTGAKLFYS DHSMNHSVSS SEAAVVPDTA AGAAPVVPVV SRGLEREARL 240 MRYREKRKSR RFEKTIRYAS RKAYAETRPR IKGRFAKRTP GPGADGEDPL EEHEEEMYSS 300 AAAAVAALMA PGGADADYGV VPTY* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727984 | 0.0 | KJ727984.1 Zea mays clone pUT6100 C2C2-CO-like transcription factor (COL7) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825843.1 | 0.0 | zinc finger protein CONSTANS-LIKE 3-like | ||||
Swissprot | Q9SK53 | 1e-72 | COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3 | ||||
TrEMBL | A0A2S3I805 | 0.0 | A0A2S3I805_9POAL; Uncharacterized protein | ||||
STRING | AC233888.1_FGP002 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2191 | 32 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24790.1 | 6e-46 | CONSTANS-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G00773.1 |
Publications ? help Back to Top | |||
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