PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G00758.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 908aa MW: 98729.8 Da PI: 5.9377

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G00758.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.9	7.6e-27	532	582	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+ sl++l+kyFs++++dAA +Lgvc+T+LKriCRq+GI+RWP+Rki+++ Pahal.G00758.2 532 EKNFSLDVLRKYFSGSLRDAAVSLGVCPTTLKRICRQHGISRWPSRKINKV 582 899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.586	521	602	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-24	535	582	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.19E-23	799	888	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.0E-22	802	884	No hit	No description
PROSITE profile	PS51745	23.573	805	887	IPR000270	PB1 domain
SMART	SM00666	8.3E-19	805	887	IPR000270	PB1 domain
Pfam	PF00564	8.9E-16	806	886	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 908 aa Download sequence Send to blast
MDMPMPSNRA GCNGNISSPM GSSDDPFGVA ATMNFDGYSE LCSPSVADQI FSMLNDPSAA 60 QQMFAMWSSL GSSPRASAMR DDMPFGTYSE PMDATAAPTQ RSNSASALSP TGVDRELKVS 120 DELVPHNGLQ QGSNIIPRSV GNFLADKMLM ALSLFRKSLS DGVLAQVWMP VEHDGRVVLS 180 TFEQPFLLDQ DLAGYREVSR NFLFSVKEEP GLHLGLPGRV FISGVPEWTS SVLYYMLELV 240 TNKEKPDFDA EMDSVCNALQ AVNLLTTTDR SDKKVYSENQ KSAFTEILDV LRAICHAHML 300 PLALTWVPTS NGISNGSCAG KNIGVDSQSG KAVLRVHESA CYINDAKMQG FLHACAERHL 360 EKGQGIAGRA LKSNLPFFSP DIREYSIEDY PLAHHARKFG LHAAVAIRLR STYTGNDDYI 420 LEFFLPVNCK GCGEQQMLLN NLSSTMQRIC KSLRTVSEAE VDNAGASGTA MHEKTNGTLP 480 TGNTESSSHD DQPITESAFQ DLSLGDKQGD REPDQAYSSS MRVAEKKRST SEKNFSLDVL 540 RKYFSGSLRD AAVSLGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLKKIQ TVINSVHGVD 600 RSLQYDPATG SLVPAASLPD KMQFSACDTL PTSSVGKPME EKSSPKSEQG LSSPDGWQRE 660 TCQFHVSSIS KREGDEVRML ANDNNSSRNC ASDVAKVTPH SNSEGAQGPL YPIGAVNSLC 720 TGEIGYISSP TSLHPSIDSV EDPTMGRNSS FVQQADVTMV DGHDTKEHTH PSTSGMTDSS 780 SGSASSQPTF KGNPGHVLKD RSSPALTVKA TYNGDTVRFK FLPAMGWYHL LEEIAKRFKL 840 MTGAFQLKYK DDEDEWVILA NDSDLQECVD VLDLIGSRNV KLQVRDLPCL ISSSGSSSCL 900 QVEAHSS*

Sequence ? help Back to Top

Protein Sequence Length: 908 aa Download sequence Send to blast

MDMPMPSNRA GCNGNISSPM GSSDDPFGVA ATMNFDGYSE LCSPSVADQI FSMLNDPSAA  60
QQMFAMWSSL GSSPRASAMR DDMPFGTYSE PMDATAAPTQ RSNSASALSP TGVDRELKVS  120
DELVPHNGLQ QGSNIIPRSV GNFLADKMLM ALSLFRKSLS DGVLAQVWMP VEHDGRVVLS  180
TFEQPFLLDQ DLAGYREVSR NFLFSVKEEP GLHLGLPGRV FISGVPEWTS SVLYYMLELV  240
TNKEKPDFDA EMDSVCNALQ AVNLLTTTDR SDKKVYSENQ KSAFTEILDV LRAICHAHML  300
PLALTWVPTS NGISNGSCAG KNIGVDSQSG KAVLRVHESA CYINDAKMQG FLHACAERHL  360
EKGQGIAGRA LKSNLPFFSP DIREYSIEDY PLAHHARKFG LHAAVAIRLR STYTGNDDYI  420
LEFFLPVNCK GCGEQQMLLN NLSSTMQRIC KSLRTVSEAE VDNAGASGTA MHEKTNGTLP  480
TGNTESSSHD DQPITESAFQ DLSLGDKQGD REPDQAYSSS MRVAEKKRST SEKNFSLDVL  540
RKYFSGSLRD AAVSLGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLKKIQ TVINSVHGVD  600
RSLQYDPATG SLVPAASLPD KMQFSACDTL PTSSVGKPME EKSSPKSEQG LSSPDGWQRE  660
TCQFHVSSIS KREGDEVRML ANDNNSSRNC ASDVAKVTPH SNSEGAQGPL YPIGAVNSLC  720
TGEIGYISSP TSLHPSIDSV EDPTMGRNSS FVQQADVTMV DGHDTKEHTH PSTSGMTDSS  780
SGSASSQPTF KGNPGHVLKD RSSPALTVKA TYNGDTVRFK FLPAMGWYHL LEEIAKRFKL  840
MTGAFQLKYK DDEDEWVILA NDSDLQECVD VLDLIGSRNV KLQVRDLPCL ISSSGSSSCL  900
QVEAHSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727756	0.0	KJ727756.1 Zea mays clone pUT5699 NLP transcription factor (NLP3) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823107.1	0.0	protein NLP2-like
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A2S3I833	0.0	A0A2S3I833_9POAL; Uncharacterized protein
STRING	Pavir.Ga01502.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-164	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.G00758.2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]