PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G00758.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 942aa MW: 102513 Da PI: 6.1262

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G00758.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.8	7.9e-27	566	616	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+ sl++l+kyFs++++dAA +Lgvc+T+LKriCRq+GI+RWP+Rki+++ Pahal.G00758.1 566 EKNFSLDVLRKYFSGSLRDAAVSLGVCPTTLKRICRQHGISRWPSRKINKV 616 899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.586	555	636	IPR003035	RWP-RK domain
Pfam	PF02042	3.0E-24	569	616	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.3E-23	833	922	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.1E-22	836	918	No hit	No description
SMART	SM00666	8.3E-19	839	921	IPR000270	PB1 domain
PROSITE profile	PS51745	23.573	839	921	IPR000270	PB1 domain
Pfam	PF00564	9.3E-16	840	920	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 942 aa Download sequence Send to blast
MDMPMPSNRA GCNGNISSPM GSSDDPFGVA ATMNFDGYSE LCSPSVADQI FSMLNDPSAA 60 QQMFAMWSSL GSSPRASAMR DDMPFGTYSE PMDATAAPTQ RSNSASALSP TGVDRELKVS 120 DELVPHNGLQ QGSNIIPRSV GNFLADKMLM ALSLFRKSLS DGVLAQVWMP VEHDGRVVLS 180 TFEQPFLLDQ DLAGYREVSR NFLFSVKEEP GLHLGLPGRV FISGVPEWTS SVLYYSKPEY 240 LRMDHALRHE IRGSLAMPIY DPSKGSCCAV LELVTNKEKP DFDAEMDSVC NALQAVNLLT 300 TTDRSDKKVY SENQKSAFTE ILDVLRAICH AHMLPLALTW VPTSNGISNG SCAGKNIGVD 360 SQSGKAVLRV HESACYINDA KMQGFLHACA ERHLEKGQGI AGRALKSNLP FFSPDIREYS 420 IEDYPLAHHA RKFGLHAAVA IRLRSTYTGN DDYILEFFLP VNCKGCGEQQ MLLNNLSSTM 480 QRICKSLRTV SEAEVDNAGA SGTAMHEKTN GTLPTGNTES SSHDDQPITE SAFQDLSLGD 540 KQGDREPDQA YSSSMRVAEK KRSTSEKNFS LDVLRKYFSG SLRDAAVSLG VCPTTLKRIC 600 RQHGISRWPS RKINKVNRSL KKIQTVINSV HGVDRSLQYD PATGSLVPAA SLPDKMQFSA 660 CDTLPTSSVG KPMEEKSSPK SEQGLSSPDG WQRETCQFHV SSISKREGDE VRMLANDNNS 720 SRNCASDVAK VTPHSNSEGA QGPLYPIGAV NSLCTGEIGY ISSPTSLHPS IDSVEDPTMG 780 RNSSFVQQAD VTMVDGHDTK EHTHPSTSGM TDSSSGSASS QPTFKGNPGH VLKDRSSPAL 840 TVKATYNGDT VRFKFLPAMG WYHLLEEIAK RFKLMTGAFQ LKYKDDEDEW VILANDSDLQ 900 ECVDVLDLIG SRNVKLQVRD LPCLISSSGS SSCLQVEAHS S*

Sequence ? help Back to Top

Protein Sequence Length: 942 aa Download sequence Send to blast

MDMPMPSNRA GCNGNISSPM GSSDDPFGVA ATMNFDGYSE LCSPSVADQI FSMLNDPSAA  60
QQMFAMWSSL GSSPRASAMR DDMPFGTYSE PMDATAAPTQ RSNSASALSP TGVDRELKVS  120
DELVPHNGLQ QGSNIIPRSV GNFLADKMLM ALSLFRKSLS DGVLAQVWMP VEHDGRVVLS  180
TFEQPFLLDQ DLAGYREVSR NFLFSVKEEP GLHLGLPGRV FISGVPEWTS SVLYYSKPEY  240
LRMDHALRHE IRGSLAMPIY DPSKGSCCAV LELVTNKEKP DFDAEMDSVC NALQAVNLLT  300
TTDRSDKKVY SENQKSAFTE ILDVLRAICH AHMLPLALTW VPTSNGISNG SCAGKNIGVD  360
SQSGKAVLRV HESACYINDA KMQGFLHACA ERHLEKGQGI AGRALKSNLP FFSPDIREYS  420
IEDYPLAHHA RKFGLHAAVA IRLRSTYTGN DDYILEFFLP VNCKGCGEQQ MLLNNLSSTM  480
QRICKSLRTV SEAEVDNAGA SGTAMHEKTN GTLPTGNTES SSHDDQPITE SAFQDLSLGD  540
KQGDREPDQA YSSSMRVAEK KRSTSEKNFS LDVLRKYFSG SLRDAAVSLG VCPTTLKRIC  600
RQHGISRWPS RKINKVNRSL KKIQTVINSV HGVDRSLQYD PATGSLVPAA SLPDKMQFSA  660
CDTLPTSSVG KPMEEKSSPK SEQGLSSPDG WQRETCQFHV SSISKREGDE VRMLANDNNS  720
SRNCASDVAK VTPHSNSEGA QGPLYPIGAV NSLCTGEIGY ISSPTSLHPS IDSVEDPTMG  780
RNSSFVQQAD VTMVDGHDTK EHTHPSTSGM TDSSSGSASS QPTFKGNPGH VLKDRSSPAL  840
TVKATYNGDT VRFKFLPAMG WYHLLEEIAK RFKLMTGAFQ LKYKDDEDEW VILANDSDLQ  900
ECVDVLDLIG SRNVKLQVRD LPCLISSSGS SSCLQVEAHS S*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727756	0.0	KJ727756.1 Zea mays clone pUT5699 NLP transcription factor (NLP3) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823107.1	0.0	protein NLP2-like
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A2S3I833	0.0	A0A2S3I833_9POAL; Uncharacterized protein
STRING	Pavir.J35714.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.G00758.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]