PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G00724.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GATA | ||||||||
Protein Properties | Length: 337aa MW: 36665.1 Da PI: 6.9872 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.7 | 1.2e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Pahal.G00724.2 7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41 ****************55555***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.5E-10 | 1 | 53 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.9E-11 | 5 | 45 | No hit | No description |
CDD | cd00202 | 1.11E-15 | 6 | 40 | No hit | No description |
PROSITE profile | PS50114 | 11.345 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.8E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.5E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLANYTPMHR KDDIDDDEPR 60 VSKLKPPTSK LKSQKKKASH IIMENVPFSG QNFLKMGDAD TSNRSSLGSA ISYSESCAPY 120 GDVDASEMSG SAQSHAWESL VPSRKRSCVT RPKASPVEKL VKDLKSIMHE DQLYYLSGSS 180 EEDLLYHSET PVGSFEIGSG SVLLRHPNSK SPEEESEASS IPSDGKSYIT SESYSGSALF 240 VVHDGNKGTV NLKAAIATPK RLPLHIEDNA SRDKLHCKKQ HILESIDSPL VSVDLEEKEI 300 KEIGEVENIS ESIGFAGSTM KLLKRSHDTH IQGDSG* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825664.1 | 0.0 | GATA transcription factor 26-like isoform X3 | ||||
TrEMBL | A0A2S3I7V3 | 0.0 | A0A2S3I7V3_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2S3I815 | 0.0 | A0A2S3I815_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga01522.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 2e-65 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G00724.2 |