PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00688.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 342aa    MW: 36841.9 Da    PI: 8.5039
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00688.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.2e-12273318655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+ l+P+     +k  s a++L +Av++I+ Lq
  Pahal.G00688.1 273 SIAERERRTRISEKLRKLQALVPNM----DKQTSTADMLDLAVDHIRGLQ 318
                     689*********************7....688****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.475267317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-15270334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.86E-13271322No hitNo description
Gene3DG3DSA:4.10.280.104.1E-14272332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-13273323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9273318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDPPPQRGRS RYGGGGSGQQ PQQQFPFVVD PTEAPGAAAV RAFFPAPGGE PPSSSGDRAP  60
VQQQQRYGHG EISLGHGHGQ GMHHRYHQFG VEGKRDGGPP AAPLPRHSSS PPEFFSSPVV  120
DNGFPNARAG VGVGGEVHHA MSSYHKKMKA PMNLAGQGTL SHISEDGIPD LTSNVHGIGH  180
SEENITANGV ARSFSSGFSI GPWEDSNSIV FSNPASKAGI HNNDDIIASL SNYELQFGVT  240
KEAAGMDKYL QMQQDQVPFR VRAKRGCATH PRSIAERERR TRISEKLRKL QALVPNMDKQ  300
TSTADMLDLA VDHIRGLQSE LQALKEDQEK CTCRRNHPSG R*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680391e-79AK068039.1 Oryza sativa Japonica Group cDNA clone:J013131B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825346.10.0transcription factor bHLH129-like
TrEMBLA0A2S3I7V00.0A0A2S3I7V0_9POAL; Uncharacterized protein
STRINGPavir.Gb01377.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141882026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-43bHLH family protein