PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G00597.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 286aa MW: 32769 Da PI: 9.9582

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G00597.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.8	7.5e-13	11	62	1	53
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr 53 +fYn+YA+ GFs+++s+s++ k++++i ++tf+Cs+ g r ++kk+ e+++ Pahal.G00597.1 11 DFYNFYARVKGFSIQRSSSHNVKNTTTINNKTFCCSRPGIRGPDKKE-ESSKY 62 6******************************************9999.33333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-9	11	66	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MKFYAEQEAY DFYNFYARVK GFSIQRSSSH NVKNTTTINN KTFCCSRPGI RGPDKKEESS 60 KYSRPRPDIC ILDINNVKKI PKQYILKRWT IDAKVLHIKR NSETQEDPKT KLSQRRKELS 120 RIFLKLAAQA VESDETFFMA VSSAEQLAED VEKSLGKRFD PDLDRTQQKD EVIKPRGIEV 180 KEKEDRGYKR PIGGFEKATR QRKKIKNDLK ASDSALKVNT SSASETSTHQ HHIQIPSYYL 240 VENAFMPPYF GPFFGTPDHG QGTQPGNATQ SFNANPNMDQ LLKFE*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683537.1	4e-49	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3L6SS01	1e-114	A0A3L6SS01_PANMI; Protein FAR1-RELATED SEQUENCE 7-like
STRING	Pavir.Ba02122.1.p	6e-78	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14807	2	2

Link Out ? help Back to Top
Phytozome	Pahal.G00597.1