PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G00317.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 176aa MW: 19889.9 Da PI: 9.1265 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.2 | 2.9e-25 | 11 | 59 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtf+kRr g+lKKA+ELSvLCda++ vi+fs++gk+ye + Pahal.G00317.1 11 RIENPGHRQVTFCKRRMGLLKKANELSVLCDADIGVIVFSPHGKMYELA 59 8*********************************************965 PP | |||||||
2 | K-box | 40.2 | 1.4e-14 | 75 | 144 | 1 | 69 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskK 69 y++++g+s ++k + qe+ L +eie Lq+ +R + Ge d++ +sl eL++Le++Le +++iRs+K Pahal.G00317.1 75 YGERQGESSGKKKPQAIPQEVLALAREIELLQKGLRYMYGEnDINHMSLDELESLESNLEIWVQNIRSQK 144 67789999999*****************************978*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 6.54E-28 | 1 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.889 | 2 | 62 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-35 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.60E-36 | 3 | 79 | No hit | No description |
PRINTS | PR00404 | 6.8E-26 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 4 | 58 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-24 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-26 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-26 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-14 | 83 | 144 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 8.389 | 88 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MMARGKVQMR RIENPGHRQV TFCKRRMGLL KKANELSVLC DADIGVIVFS PHGKMYELAT 60 NGNMQVLIER YKTAYGERQG ESSGKKKPQA IPQEVLALAR EIELLQKGLR YMYGENDINH 120 MSLDELESLE SNLEIWVQNI RSQKISEQNG ILNASGSVMV PQVPFQLNRG SNCYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-16 | 2 | 77 | 1 | 74 | MEF2C |
5f28_B | 4e-16 | 2 | 77 | 1 | 74 | MEF2C |
5f28_C | 4e-16 | 2 | 77 | 1 | 74 | MEF2C |
5f28_D | 4e-16 | 2 | 77 | 1 | 74 | MEF2C |
6byy_A | 4e-16 | 2 | 77 | 1 | 74 | MEF2 CHIMERA |
6byy_B | 4e-16 | 2 | 77 | 1 | 74 | MEF2 CHIMERA |
6byy_C | 4e-16 | 2 | 77 | 1 | 74 | MEF2 CHIMERA |
6byy_D | 4e-16 | 2 | 77 | 1 | 74 | MEF2 CHIMERA |
6bz1_A | 4e-16 | 2 | 77 | 1 | 74 | MEF2 CHIMERA |
6bz1_B | 4e-16 | 2 | 77 | 1 | 74 | MEF2 CHIMERA |
6bz1_C | 4e-16 | 2 | 77 | 1 | 74 | MEF2 CHIMERA |
6bz1_D | 4e-16 | 2 | 77 | 1 | 74 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 2e-61 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823445.1 | 1e-111 | MADS-box transcription factor 26-like isoform X2 | ||||
Swissprot | A2YQK9 | 9e-59 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 9e-59 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A2T8ICF2 | 1e-110 | A0A2T8ICF2_9POAL; Uncharacterized protein | ||||
STRING | Si012632m | 2e-88 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 5e-46 | AGAMOUS-like 12 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G00317.1 |
Publications ? help Back to Top | |||
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