PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G00313.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 179aa MW: 20793.2 Da PI: 10.198 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.9 | 3.2e-24 | 10 | 56 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 rien rqvtf+kRr g+lKKA+ELSvLCda++ vi++s++g++y+ Pahal.G00313.1 10 RIENPVHRQVTFCKRRMGLLKKAKELSVLCDADIGVIVVSPHGRIYD 56 8*******************************************997 PP | |||||||
2 | K-box | 54.1 | 6.6e-19 | 75 | 158 | 2 | 84 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 + +g+s e++k++ qqe+ L +ei+ q+ +R + Ge d++ ++l eLq Le++Le + +iRs+K++++ ++ie l++k Pahal.G00313.1 75 SEMHGESSEQNKTQAIQQEVLALTREIDLFQKGLRYIHGEkDINHMNLGELQALENNLEMWVHNIRSQKMQIMSREIEMLRNKV 158 5677888999*****************************868***************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.09E-26 | 1 | 73 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.6E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.469 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.37E-35 | 2 | 73 | No hit | No description |
PRINTS | PR00404 | 1.6E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.4E-23 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.9E-21 | 81 | 159 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.374 | 87 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KAKELSVLCD ADIGVIVVSP HGRIYDLATN 60 GNMQGLIERY RRTYSEMHGE SSEQNKTQAI QQEVLALTRE IDLFQKGLRY IHGEKDINHM 120 NLGELQALEN NLEMWVHNIR SQKMQIMSRE IEMLRNKVGS ASVTLFMHLT KIYIQRRD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU976131 | 1e-145 | EU976131.1 Zea mays clone 645550 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824407.1 | 1e-114 | MADS-box transcription factor 26-like | ||||
Swissprot | A2YQK9 | 6e-63 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 6e-63 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A2T8ICG2 | 1e-112 | A0A2T8ICG2_9POAL; Uncharacterized protein | ||||
STRING | Si012632m | 1e-108 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 3e-52 | AGAMOUS-like 12 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G00313.1 |
Publications ? help Back to Top | |||
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