PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00227.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 293aa    MW: 29944.3 Da    PI: 7.8718
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00227.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer89.33.6e-282370557
     ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                    +YkeC++NhAa++Gg+a+DGCgE+mps     ++++lkCaACgCHR+FHRr  
  Pahal.G00227.1 23 KYKECMRNHAAAMGGQAFDGCGEYMPS-----SPDSLKCAACGCHRSFHRRAA 70
                    7*************************9.....799****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015661.5E-242369IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.9E-232369IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-202368IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.1182469IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.44E-19161233IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-30164234IPR009057Homeodomain-like
TIGRFAMsTIGR015656.3E-27175232IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MMDQLSLVPY EGAGGGGGGG DGKYKECMRN HAAAMGGQAF DGCGEYMPSS PDSLKCAACG  60
CHRSFHRRAA GSSSCGAAAP VFFRPPPPAP PLHYQHHHHH QAALQAFLPS VPAAAPPHLA  120
LPYHAVPNAA AAAPWLARSG SETPPRADDF GVAGLGLGGS AGGAGSGSGS GSFGRKRFRT  180
KFTPEQKERM REFAEKQGWR IQRNDDGALE RFCDEIGVKR QVLKVWMHNH KNQLASTSPT  240
SAAAAAAGIG ISPAGPGMGT GAGASGDGDD DDTDDSPPRA AVSSPSPSPI SV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-251762371879ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270250.0KJ727025.1 Zea mays clone pUT4006 ZF-HD transcription factor (ZHD15) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825199.10.0zinc-finger homeodomain protein 8-like
SwissprotQ7X7N31e-82ZHD8_ORYSJ; Zinc-finger homeodomain protein 8
TrEMBLA0A2S3I6S10.0A0A2S3I6S1_9POAL; Uncharacterized protein
TrEMBLA0A2T7CV340.0A0A2T7CV34_9POAL; Uncharacterized protein
STRINGOMERI04G10740.12e-88(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136492225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-24homeobox protein 31