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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.G00210.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
GRAS |
Protein Properties |
Length: 485aa MW: 51562.7 Da PI: 9.373 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.G00210.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 273.8 | 5.4e-84 | 76 | 472 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94
l +lLl+ + a ++gd ++a+a+L ++ las g dp R+aayf+ A+a rl p++++s e++ a+++f+ +sP+++f+
Pahal.G00210.1 76 LMHLLLSSVAAGEAGDVRAATAALHEVYRLASFGGgDPAPRVAAYFADAMAPRLRL-------RPPAEASSAPARGEQFLAYTMFYRASPLYQFA 163
5799****************************9999******************97.......233333444447888999************** PP
GRAS 95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpeg..............ppslRiTgvgspesgskeeleetgerLakfAeel. 172
h+taNqaI+ea+eg + +H++Dfd+s+G+QWp+L+q+L++ ++ p slRiTg+g s++el++t+ rL++fA+ +
Pahal.G00210.1 164 HFTANQAIVEAFEGGgrRSLHVVDFDVSYGFQWPSLIQSLSDAADAastsgsqdgdrrerPVSLRITGLGT----SADELRQTEARLTRFASGCp 254
*************9877889********************9887333455677788888677*********....9***************9876 PP
GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.....adhnsesFlerfleale 262
+v+fef+ +v+++ ++ + e+++ + + +++Vnl++ + + s+ + L l++sl+P +v +ve+ ++++++s+l f+ +l+
Pahal.G00210.1 255 NVRFEFEGIVTNEQNSGRHERIKNDDDATVVVNLAFPAAQSSRASARE---ACSALALIRSLNPSLVFLVERGgggnaTSRGRSSLLPPFTASLR 346
9***********************************888776444444...569******************944432333566*********** PP
GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvac.....egaerr..erhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg. 348
y++a+fdsl+++lp++s er +Er +lg ei+n+va g++r+ e + + ++W+e++e+aGF++vpls+++++qaklll++ + g
Pahal.G00210.1 347 YFAAVFDSLHESLPADSAERLAIERNYLGTEIRNAVASldrshGGDDRTaaEPCSSSASWKEMMESAGFEAVPLSSRTVSQAKLLLKMKSgC-Gg 440
************************************9622222455554226678899****************************997632.22 PP
GRAS 349 ...yrve..eesgslv.lgWkdrpLvsvSaWr 374
+rv + g ++ lgW+d +L++++aWr
Pahal.G00210.1 441 gggFRVVveGDGGRAMsLGWRDSALITTTAWR 472
45688873244555556**************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 485 aa
Download sequence Send
to blast |
MNLTLSLAVN GGTGTGTGKK RKVRDGVVDD VVGDGGDRGR VVRLLQARER MVARLESDDQ 60 RVAPDDAAGG GGGLRLMHLL LSSVAAGEAG DVRAATAALH EVYRLASFGG GDPAPRVAAY 120 FADAMAPRLR LRPPAEASSA PARGEQFLAY TMFYRASPLY QFAHFTANQA IVEAFEGGGR 180 RSLHVVDFDV SYGFQWPSLI QSLSDAADAA STSGSQDGDR RERPVSLRIT GLGTSADELR 240 QTEARLTRFA SGCPNVRFEF EGIVTNEQNS GRHERIKNDD DATVVVNLAF PAAQSSRASA 300 REACSALALI RSLNPSLVFL VERGGGGNAT SRGRSSLLPP FTASLRYFAA VFDSLHESLP 360 ADSAERLAIE RNYLGTEIRN AVASLDRSHG GDDRTAAEPC SSSASWKEMM ESAGFEAVPL 420 SSRTVSQAKL LLKMKSGCGG GGGFRVVVEG DGGRAMSLGW RDSALITTTA WRRRRRRSIS 480 KTSS*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC243254 | 0.0 | AC243254.2 Panicum virgatum clone PV_ABa094-K10, complete sequence. |