PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00185.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 844aa    MW: 87252.3 Da    PI: 6.4157
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00185.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.1e-12589632855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      Er RR+++++ f++L  llP++     +K +K++i+ +Av YIksL+
  Pahal.G00185.1 589 TERERRKKMKNMFSTLHALLPQL----PEKADKSTIVGEAVTYIKSLE 632
                     7*********************6....39*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.681581631IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-14584653IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.41E-12586636No hitNo description
Gene3DG3DSA:4.10.280.101.5E-14586647IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-9589637IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9589632IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.673764843IPR002912ACT domain
CDDcd048730.00261765816No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MSQEGANLPH EAERSHDHAT APHESTPTFD GLVIVRSSSN PSSVSKLASE INNAGSKPAS  60
PAVLHAGEDN NTESKIASPA VLDAGQGNNA GSKLASPAVL HTGEFNNTES KIAIPAMLHA  120
GEGKDNIDRP KLASPVVLHA GEGNKTREDD NAGSKMDGPA MLHVSVDNNA HAGFKVDSPA  180
LLYAGENDDS GSKLASQPVL HAGEDKDINA GSKLSSPVEI HAGKDNKAGS KLAIQAVPAG  240
EDNNAWSKLS TLVLPRAGEG NNIASKLAIQ AVIHADEGSN TVSKQAIQAM PHVDEDNNSR  300
SKLVIPAGHH AGEGNNTAFK LAIPAVPHTD DDHNIESKLA KPVVPHAGEG NIAASKLAIQ  360
AAIHAGESNY VVSKLAIQAM PHVEEDNNSK SKLVSPPGHH VGEGNNTASK LAIQAVPHVG  420
EDNNTESKLA RPAVLHAGEG NNAMSKLAIQ SVPQADEDNN SRSKLARPEV LNAGEDNNAT  480
SKLAIQAPPH AGEDNNAGSK LANPAAVDDG GNNTKEGKSD VARGEGGENI AATVSNGGAL  540
SETSKKSTSD GGASHDAVKD APAAVAGGGK GKGKGVEATE MDHALHIWTE RERRKKMKNM  600
FSTLHALLPQ LPEKADKSTI VGEAVTYIKS LEGTVQRLEK LKQERMRAQQ AGQQQLAVGA  660
GSSASAPAPP PAQAPATREA VLADMVQSWN AQEALMAELK AAATAVVYGA GTAFDGAAPA  720
PAPAPAPAPA PLPPPPPLPP RAPPALQTWS APNIVVCVAG DNAFINLCTP RHPGMLTRLF  780
YVLERHRINV VTATVSSSPS HSMFFIQARI NTAAPPPPML PENMTVEERY KLAVAEMLHA  840
VGN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0872747e-71BT087274.2 Zea mays full-length cDNA clone ZM_BFb0025H05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825310.10.0uncharacterized protein LOC112900700
TrEMBLA0A2S3I6J30.0A0A2S3I6J3_9POAL; Uncharacterized protein
STRINGSi009419m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.17e-26bHLH family protein