PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G00118.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 299aa MW: 31674.5 Da PI: 9.1617

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G00118.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	104.6	8.5e-33	78	175	2	99
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 CaaC+++r++C+++C+lapyfpa++p +f+ v ++FG++n+l++l+++p+ + ++ ++++v e+++r+ dPv+G+vg i +l+ ql +++el++ Pahal.G00118.1 78 CAACRHKRQRCPPGCALAPYFPADDPDRFRSVLRVFGVKNLLRTLREVPRPRWDACVRTIVHESRMRLADPVRGCVGAIEDLEAQLVDTAVELEV 172 ********************************************************************************************998 PP DUF260 97 lke 99 l++ Pahal.G00118.1 173 LRR 175 875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.619	76	177	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.1E-32	78	174	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MSAPAAAQGA PTWSPPSGCA IASESEPDSP SSDGTSSPPA PATGGRSSIA SSSTPPPAAR 60 ARAPATPGSG GGSPPPGCAA CRHKRQRCPP GCALAPYFPA DDPDRFRSVL RVFGVKNLLR 120 TLREVPRPRW DACVRTIVHE SRMRLADPVR GCVGAIEDLE AQLVDTAVEL EVLRRRQEAY 180 QQARRRGGLR LQPPNPRGRA DADAALPSGV TNLGVMQPQG SYGGATWPRA MTGLVATQPQ 240 LSAMAPQFYG TQPQTAMRRQ PTPGVTAMVH DGFGNAWAND DERGDPDDMR RRRRDEES*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-23	63	171	2	105	LOB family transfactor Ramosa2.1
5ly0_B	6e-23	63	171	2	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002436474.1	6e-46	LOB domain-containing protein 22
TrEMBL	A0A2S3I6F3	0.0	A0A2S3I6F3_9POAL; Uncharacterized protein
STRING	Pavir.J19063.1.p	1e-111	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19681	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	4e-23	LOB domain-containing protein 11

Link Out ? help Back to Top
Phytozome	Pahal.G00118.1