PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00057.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 350aa    MW: 36726.3 Da    PI: 6.6653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00057.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.6e-09165212455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  Pahal.G00057.1 165 SHSLAERVRREKISQRMKFLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 212
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.94E-17159230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.77E-10159216No hitNo description
PROSITE profilePS5088815.123161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-17161229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-6165212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-9167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDSDYVASLL MGHSAAPGLD FAALDGYFLD ALCGAGAGLF GAPGVAAGAG GGGSPEGSSV  60
SDPAWARARD GGNARKRKAP PAGGASGKEA CLGKAGEPKG PDGKKCRVGT GGSPVKPKVE  120
EATASDGSVE DKGQKKGKGK SAKPPVEPPK DYVHVRARRG QATDSHSLAE RVRREKISQR  180
MKFLQDLVPG CNKVVGKALM LDEIINYVQS LQQQVEFLSM KLATVNPQLD FSNLSTLLHK  240
DMYQACGPPV NSVFPLESAG AALPFCNQAD LFQSFGSGAM EDQCSLSLLD MALPHTTNPQ  300
FAFQKQQRDF REDGLQNSLP IVSEQSQENG VSAPSFDGQL QADQTKIEF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804696.10.0transcription factor BHLH089-like
SwissprotQ9CAA96e-51BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A2S3H1260.0A0A2S3H126_9POAL; Uncharacterized protein
STRINGPavir.Ba01626.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.11e-52bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]