PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00014.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 713aa    MW: 77825.6 Da    PI: 4.5565
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00014.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.61.3e-45101352128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     ppGfrF+Ptdeelv ++Lk+++ + + +    +++vd+yk++P++Lp+  ++++++++w+fFs+ d+ky++g+r++r+t +gyWkatgkd+ ++ 
  Pahal.G00014.1  10 PPGFRFSPTDEELVLYFLKRRIVSGRPSP--YVADVDVYKSHPSHLPErsALQTGDRQWFFFSRMDRKYPNGSRASRTTGDGYWKATGKDRFICG 102
                     8********************88888555..69*************94357888999*************************************9 PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +g++vg kktLv+++grap+ge+tdWvmhey+l
  Pahal.G00014.1 103 -GGRAVGNKKTLVYHHGRAPRGERTDWVMHEYTL 135
                     .99*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-527158IPR003441NAC domain
PROSITE profilePS5100551.6279158IPR003441NAC domain
PfamPF023657.5E-2410135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MEAPPPRRWP PGFRFSPTDE ELVLYFLKRR IVSGRPSPYV ADVDVYKSHP SHLPERSALQ  60
TGDRQWFFFS RMDRKYPNGS RASRTTGDGY WKATGKDRFI CGGGRAVGNK KTLVYHHGRA  120
PRGERTDWVM HEYTLLADAL PPAAQGRETY ALYKLFQKSG AGPKNGEQYG APFREEDWLD  180
NDEEGVTAAA PANSVPNTNN CPATVEEHAI ADRELPIEDL DELLSQIGND KEEFGEAQLD  240
FSTPATSHAQ SQGWLSDGGD KAEVVDASIS SGAVVAAENT CTGPPLGDIE QLLMQISDDQ  300
QNAELFSDLS ASVPQLQLQC DGHQVWLDAH REQEVCAPDP TSSSGAEVTA ECTDTELGDL  360
EGLLLHIANE EDMVEPLSDL SGPIPYHNFN QVGIGDFHES HGAPVGNLSC IVQESTFDPQ  420
TETRSQFPQS NLTNVPFSGE TNSSEGTSVP RSVSGLISYS QDADEFLEIN DFFDLEDVEQ  480
SANCTATEHL IPATNGMFDN LEYSDAHTFL PGPFDTAGVV AENQFFDFGN TGIQDQGYQY  540
TTEVRTHNQA ALNVRSHMKH THVVLPSHAS GTLNLHAANE PPNRSSTASQ SWFNAALSAL  600
LDSVPSSPAL AAEIENTVIN KTLQRISSFR SHQASGQENT VINRTLHRIS SFRSQQAASE  660
QPSTPRIQVT RGGRLMFISL LVTLAAVMWT FTVGSAGSAL NFCKGLWKSS SR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-431013516140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802095.10.0NAC domain-containing protein 82-like
TrEMBLA0A2S3H1B90.0A0A2S3H1B9_9POAL; Uncharacterized protein
STRINGPavir.J04800.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91282840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.12e-71NAC domain containing protein 17