PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F02723.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 415aa MW: 44265.6 Da PI: 4.5758

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F02723.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.8	4.3e-39	75	173	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkC++dC+lapyfpa+q+++f n+h+lFG+sn+lk+lk+l+++ dams+l+y++++ra+dPv G++++il+l++qle + ael Pahal.F02723.1 75 ACAACKYQRRKCNPDCPLAPYFPADQQRRFLNAHRLFGVSNILKTLKRLRPDLCADAMSTLIYQSDMRAQDPVGGCYRFILSLERQLELETAELT 169 7********************************************************************************************98 PP DUF260 96 llke 99 ++ + Pahal.F02723.1 170 AVLH 173 8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.065	74	175	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.8E-37	75	170	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MTSSAAPAPA ASQPPRLHIT TSTTGASTIT SPSSHHSPSS ARSPHSASRS SSPRGSSNTG 60 AGAGGGSGSG GTNQACAACK YQRRKCNPDC PLAPYFPADQ QRRFLNAHRL FGVSNILKTL 120 KRLRPDLCAD AMSTLIYQSD MRAQDPVGGC YRFILSLERQ LELETAELTA VLHHLALCRQ 180 AAAAATAIPP QEGGMADLDV TSSNQPLLLN AEQEVVDALY ANHEPDAAIL QTDHVHHHDH 240 GDSPHDHGEQ QQQQQLFDYF YYEATASDDA SSKPTIDINL DNMQQFDFDD TCAAEKVDLS 300 TAGPEEIGQQ QHHLDMNCQI DHEDYEIKAA ALVDAFDMRQ ELQPVDVNAG VDVKAVDVNA 360 GIGVDIKAVD VNANLDVNVD LQEEDANNIA AGDGAAQMAA DLSHCRLGLG FSSF*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MTSSAAPAPA ASQPPRLHIT TSTTGASTIT SPSSHHSPSS ARSPHSASRS SSPRGSSNTG  60
AGAGGGSGSG GTNQACAACK YQRRKCNPDC PLAPYFPADQ QRRFLNAHRL FGVSNILKTL  120
KRLRPDLCAD AMSTLIYQSD MRAQDPVGGC YRFILSLERQ LELETAELTA VLHHLALCRQ  180
AAAAATAIPP QEGGMADLDV TSSNQPLLLN AEQEVVDALY ANHEPDAAIL QTDHVHHHDH  240
GDSPHDHGEQ QQQQQLFDYF YYEATASDDA SSKPTIDINL DNMQQFDFDD TCAAEKVDLS  300
TAGPEEIGQQ QHHLDMNCQI DHEDYEIKAA ALVDAFDMRQ ELQPVDVNAG VDVKAVDVNA  360
GIGVDIKAVD VNANLDVNVD LQEEDANNIA AGDGAAQMAA DLSHCRLGLG FSSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-24	71	189	7	123	LOB family transfactor Ramosa2.1
5ly0_B	1e-24	71	189	7	123	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820222.1	0.0	uncharacterized protein LOC112896465
TrEMBL	A0A2S3I2F9	0.0	A0A2S3I2F9_9POAL; Uncharacterized protein
STRING	Pavir.Fb01201.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5228	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	6e-35	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Pahal.F02723.1