PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F02573.4
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 395aa    MW: 41746.5 Da    PI: 12.0303
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F02573.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.61.3e-28252301251
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                     pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ
  Pahal.F02573.4 252 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 301
                     9************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.33E-13249302IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-25250301IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-21252302IPR006447Myb domain, plants
PfamPF002491.2E-5253301IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEARAASAPD LSLHISLPSS AASPPPAPGR LGAAAGGGRG AQPAAGGDPW RRLNGSTAST  60
ELSLSPPPRQ EAAGDVLPWR LRPPAANNAA SSSTSAATAE AASLVPVTVP RLSLDAATEA  120
ARARPINGVP VYSSPRAAGH PFLGAGEYRQ GHPKVGLYNP YHASSWPSSL RSTTTSPAAA  180
PSASDPAAAF LSPSAYHRML SGTGRLHLHG VLADTFRGYG GHHQQQQQHF GSLASARYMP  240
KFPASRRGMR APRMRWTSSL HARFVHAVEL LGGHERATPK SVLELMDVKD LTLAHVKSHL  300
QVQWTAVAPA TTTSQMLARL HQLARMRARS RSPADPPPRR VQRAMPAAML SAPRLRIPMA  360
AGHAAALHQE INGHHQLHAM RTPIVQLAYH PPLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-14253306457Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-14253306457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-14253306457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-14253306457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-14253306457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-14253306457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-14253306457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-14253306457Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9350031e-153EU935003.1 Zea mays cultivar B73 kanadi1 (kan1) mRNA, complete cds.
GenBankJX4699821e-153JX469982.1 Zea mays subsp. mays clone UT3342 G2-like transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820101.10.0probable transcription factor RL9 isoform X3
SwissprotQ0J2355e-56ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLA0A2T7D7E40.0A0A2T7D7E4_9POAL; Uncharacterized protein
STRINGPavir.Fb00812.1.p1e-152(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.16e-34G2-like family protein