PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F02535.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

M-type_MADS

Protein Properties

Length: 366aa MW: 39336.5 Da PI: 5.044

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F02535.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	33	7.7e-11	9	49	1	41
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 k ien +r t+ +Rr g+ K + L +LC++e+++i f Pahal.F02535.1 9 KLIENPKKRRATYKNRRDGLVQKTSQLATLCGVEALLICFD 49 569***********************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.9E-9	1	62	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.58E-15	1	52	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.923	1	48	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-5	3	23	IPR002100	Transcription factor, MADS-box
CDD	cd00120	6.50E-16	3	51	No hit	No description
Pfam	PF00319	1.5E-13	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-5	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MPRGKLGMKL IENPKKRRAT YKNRRDGLVQ KTSQLATLCG VEALLICFDP KPAGSGQDGG 60 GSAYAVTTWP ADREDVLELI KKYRETPADK IRHSFTAAAY YQEELAKQHR KLLKIEQCGP 120 DMLSLQDCRL ADLSPADLDG LLVTLDETLR KAQQRIVALG GHVEDDGDVP SATATVAAPM 180 PLADYNSFDL AFSVPDAGSM VTQYYYPPLD MLPQPVLPLQ PPCLAYHQMP LPSYTFQMPP 240 PPLDLGMAGT GTVDFRPFAT NFSHGGATGP EFYDDFMPGF DATGGGVYVD DYVIAGGQSF 300 AAGHAGAGYQ HEHNLPAGIL PVSWLNNNPG PMDAAALEER NGYAVLPGSS SSSSSTFFQG 360 GFQKK*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MPRGKLGMKL IENPKKRRAT YKNRRDGLVQ KTSQLATLCG VEALLICFDP KPAGSGQDGG  60
GSAYAVTTWP ADREDVLELI KKYRETPADK IRHSFTAAAY YQEELAKQHR KLLKIEQCGP  120
DMLSLQDCRL ADLSPADLDG LLVTLDETLR KAQQRIVALG GHVEDDGDVP SATATVAAPM  180
PLADYNSFDL AFSVPDAGSM VTQYYYPPLD MLPQPVLPLQ PPCLAYHQMP LPSYTFQMPP  240
PPLDLGMAGT GTVDFRPFAT NFSHGGATGP EFYDDFMPGF DATGGGVYVD DYVIAGGQSF  300
AAGHAGAGYQ HEHNLPAGIL PVSWLNNNPG PMDAAALEER NGYAVLPGSS SSSSSTFFQG  360
GFQKK*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2S3HDM4	0.0	A0A2S3HDM4_9POAL; Uncharacterized protein
STRING	Si039273m	1e-177	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14351	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	4e-14	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Pahal.F02535.1