PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F02503.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 285aa    MW: 29316.5 Da    PI: 8.4765
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F02503.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006191113123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC+ C + F ++  L  H++ H
  Pahal.F02503.1  91 FKCNFCQRKFYTSQALGGHQNAH 113
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.15E-688118No hitNo description
PROSITE profilePS5015711.38591118IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDKGSSSRTA SMEVEGAGLQ VEDGEEEVQA REKEHEAPAK ELDLLGALGS EPPEVKAVAP  60
GKGKEKVVVA EEEKAPATAP ASSGGEKKRS FKCNFCQRKF YTSQALGGHQ NAHKRERSLA  120
KRGAAAAAAA AAAAGRGLYG GADPFLPPHH LRFPHAWPYS TGGGRPSSSS FLGLGRGSAA  180
AAPFYGLHHG WAAHAHAHGQ PSMPGLARHA GAERPIYAPH GYGYGYGASS RAPSPAVLDS  240
GMAGLRWAGV ASGASAGGDN GAAHEVTQQQ EESQSCKIDL NLRL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703069e-37HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822315.10.0zinc finger protein GIS3-like
TrEMBLA0A2S3I1W90.0A0A2S3I1W9_9POAL; Uncharacterized protein
TrEMBLA0A2T7D5Q30.0A0A2T7D5Q3_9POAL; Uncharacterized protein
STRINGPavir.Ia01442.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130642230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.12e-13zinc finger protein 4