PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F02453.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 275aa    MW: 29436 Da    PI: 11.6882
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F02453.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.57.7e-142978255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr++  rgrWv+eIr p++   r+r+ lg+f+t e+Aa+a +aa  +++g
  Pahal.F02453.1 29 KYRGVRRRG-RGRWVSEIRRPNS---RRRICLGSFDTSEKAARAFDAAHVCFRG 78
                    8*****999.8*********933...5*********************988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.7E-242888IPR001471AP2/ERF domain
PROSITE profilePS5103220.1122988IPR001471AP2/ERF domain
SMARTSM003805.4E-252994IPR001471AP2/ERF domain
PfamPF008471.8E-82977IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-162988IPR016177DNA-binding domain
PRINTSPR003677.1E-63041IPR001471AP2/ERF domain
CDDcd000189.02E-144188No hitNo description
PRINTSPR003677.1E-65268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MPATGSSSSS TTRGRGRHAY APSPSGKRKY RGVRRRGRGR WVSEIRRPNS RRRICLGSFD  60
TSEKAARAFD AAHVCFRGPG AMDGLNFPGS PPAVGRTSHL REVRAAAVSH ANHAAATPAV  120
MTTAARPGNV WPRCRTPAEP SVPPQRRGRR QALPRRARWW KVSPAPPHVY AAAASHANQA  180
AEADAAPEAA TAGDRGLPVE RVAEPAPLQV SAERLNWSQL VANPPPLYLP TVTGSHKHLP  240
ITSTAAPPDD SEENEDRPCP GLWSFDSGGS CFRH*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813238.11e-156ethylene-responsive transcription factor ABI4-like
TrEMBLA0A2S3HLJ10.0A0A2S3HLJ1_9POAL; Uncharacterized protein
STRINGSi008323m4e-79(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.13e-17ERF family protein