PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F02429.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 294aa MW: 32232.6 Da PI: 4.5455 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 102 | 151 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp+ k r++lg++ ++eeAa+a++a +++++g Pahal.F02429.1 102 QFRGIRQRS-WGKWAAEIRDPN---KGVRVWLGTYNSPEEAARAYDAEARRIRG 151 69****999.**********93...25************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.2E-35 | 102 | 165 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.813 | 102 | 159 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.13E-31 | 102 | 160 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.6E-31 | 102 | 161 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-21 | 102 | 161 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.7E-11 | 103 | 151 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-9 | 103 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-9 | 125 | 141 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MCGGVVVGGY VSPRQRVTAC HLCPGKKPSS AEAVGRKGTH EEDDFDFEAD FVKFAESEES 60 EVESEDEAAK LFAAPRSVIA RDGLNTIAAG VDGSNGRKRK NQFRGIRQRS WGKWAAEIRD 120 PNKGVRVWLG TYNSPEEAAR AYDAEARRIR GKKAKLNFPD EAPVASQKRL AEPNSVEVPN 180 TGEMLITNNM TNSNADHYPV VDHTIPGPFI QTPNMSSAPL VNSAASIQEP LVNLSSDQGN 240 ANFDFSEFEP MNFLMDSSDY PINTFLGSDE SQDGYINVDL WNFDDMPIPN GFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-18 | 101 | 159 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 8e-18 | 101 | 159 | 4 | 63 | ATERF1 |
3gcc_A | 8e-18 | 101 | 159 | 4 | 63 | ATERF1 |
5wx9_A | 1e-17 | 101 | 166 | 13 | 79 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812394.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 8e-56 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A2S3HL20 | 0.0 | A0A2S3HL20_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db01962.1.p | 1e-114 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 4e-25 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F02429.1 |