PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F02428.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 481aa MW: 51870 Da PI: 5.0434

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F02428.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.4e-12	330	375	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L++l+P++ K +Ka++L + ++Y+k Lq Pahal.F02428.1 330 HSIAERLRREKISDRMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 375 99*********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.32E-17	323	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.03E-13	323	379	No hit	No description
PROSITE profile	PS50888	17.212	325	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-17	327	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.1E-9	330	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.0E-14	331	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MDYSSGSYFS PWPVNSASES YSLADGSVES FGEGSMPPSS YFMTARSDHS LKFSGHEQDS 60 AMLTNERLTY VGTGQADLLP GEILSRDKIP ENLLELQQLQ NNGNLQSNLV NPRVLQRTST 120 PGGFHQQLNT SCLSEMPHAL SSSIDSNSSE VSAFLADVNA VSSASTLCPT FQNHPSFMEP 180 VNIEAFSFQG AQSDAILNKT SHPNRNISVF DNAALASLHD SKEFISSRLP SFSSVQETNL 240 AAIGFKTQKQ EQNPMCNVPI PAFTAHNQMA VTTTQGAQIP QQMPSLVNEN KSERPVSHPS 300 DVQNQANSAG NGVGMKPRVR ARRGQATDPH SIAERLRREK ISDRMKNLQD LVPNSNKADK 360 ASMLDEIIDY VKFLQLQVKV LSMSRLGAPG AVLPLLTESQ TEGCHGQPLS APTDAQGLLD 420 AQDSEDALAF EEEVVKLMET SITSAMQYLQ NKGLCLMPVA LASAISTQKG VAAAAIPPER 480 *

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MDYSSGSYFS PWPVNSASES YSLADGSVES FGEGSMPPSS YFMTARSDHS LKFSGHEQDS  60
AMLTNERLTY VGTGQADLLP GEILSRDKIP ENLLELQQLQ NNGNLQSNLV NPRVLQRTST  120
PGGFHQQLNT SCLSEMPHAL SSSIDSNSSE VSAFLADVNA VSSASTLCPT FQNHPSFMEP  180
VNIEAFSFQG AQSDAILNKT SHPNRNISVF DNAALASLHD SKEFISSRLP SFSSVQETNL  240
AAIGFKTQKQ EQNPMCNVPI PAFTAHNQMA VTTTQGAQIP QQMPSLVNEN KSERPVSHPS  300
DVQNQANSAG NGVGMKPRVR ARRGQATDPH SIAERLRREK ISDRMKNLQD LVPNSNKADK  360
ASMLDEIIDY VKFLQLQVKV LSMSRLGAPG AVLPLLTESQ TEGCHGQPLS APTDAQGLLD  420
AQDSEDALAF EEEVVKLMET SITSAMQYLQ NKGLCLMPVA LASAISTQKG VAAAAIPPER  480
*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812392.1	0.0	transcription factor bHLH110-like
TrEMBL	A0A2S3HL11	0.0	A0A2S3HL11_9POAL; Uncharacterized protein
STRING	Pavir.Db01966.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3254	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	4e-59	LJRHL1-like 3

Link Out ? help Back to Top
Phytozome	Pahal.F02428.1