PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F02366.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 442aa MW: 43804.5 Da PI: 6.5197 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.1 | 5.7e-12 | 219 | 264 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Pahal.F02366.2 219 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 264 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.9E-17 | 212 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.66E-13 | 212 | 268 | No hit | No description |
PROSITE profile | PS50888 | 17.282 | 214 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-16 | 216 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-9 | 219 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-13 | 220 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MQPGGREMAG GEGGPQQADD FFDQMLSTLP SAWADLGAGG AKSPWELPAG AEDAAVQAAF 60 GDDSSALLVS RLRQHQIGGD VVKSSPSSSP VMLQLSDLHR HGGGLAGAGA EESAGFSPLP 120 LFTDRSAPAR EEMEGGFRSP NSAGGDHSMF NGFGMHGAAA VQPQFAQGGS VSPQSLGGPA 180 VSGGATTPAG GAASSAGGGA APPRQVRQRA RRGQATDPHS IAERLRRERI AERMKSLQEL 240 VPNANKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGGAAG MAPLVASMSS EGNSNGSSSN 300 SGGGAKGSAA TKANGNGSGE NGNGGGGLRV AENQVAKMME EDMGTAMQYL QGKGLCLMPI 360 SLASAISSAT SSASLLSRPP PVLRHPAATA ASPAPPGQPH DASNCAAAAA AATSPASASS 420 AGGGGDDPRS TKDVGGGGGK Q* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 223 | 228 | RLRRER |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062076 | 8e-63 | BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds. | |||
GenBank | KJ727938 | 8e-63 | KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812267.1 | 0.0 | transcription factor bHLH82-like isoform X2 | ||||
Swissprot | Q9ZUG9 | 1e-70 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | A0A2S3HL93 | 0.0 | A0A2S3HL93_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J04712.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30980.1 | 3e-37 | LJRHL1-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F02366.2 |
Publications ? help Back to Top | |||
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