PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F02366.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 443aa MW: 43932.6 Da PI: 6.5197

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F02366.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.7e-12	220	265	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Pahal.F02366.1 220 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 265 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.72E-13	213	269	No hit	No description
SuperFamily	SSF47459	9.03E-17	213	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.282	215	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-16	217	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-9	220	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-13	221	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MQPGGREMAG GEGGPQQADD FFDQMLSTLP SAWADLGAGG AKSPWELPAG AEDAAVQAAF 60 GDDSSALLVS RLRQHQIGGD VVKSSPSSSP VMLQLSDLHR HGGGLAGAGA EESAGFSPLP 120 LFTDRSAPAR EEMEGGFRSP NSAQGGDHSM FNGFGMHGAA AVQPQFAQGG SVSPQSLGGP 180 AVSGGATTPA GGAASSAGGG AAPPRQVRQR ARRGQATDPH SIAERLRRER IAERMKSLQE 240 LVPNANKTDK ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA GMAPLVASMS SEGNSNGSSS 300 NSGGGAKGSA ATKANGNGSG ENGNGGGGLR VAENQVAKMM EEDMGTAMQY LQGKGLCLMP 360 ISLASAISSA TSSASLLSRP PPVLRHPAAT AASPAPPGQP HDASNCAAAA AAATSPASAS 420 SAGGGGDDPR STKDVGGGGG KQ*

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MQPGGREMAG GEGGPQQADD FFDQMLSTLP SAWADLGAGG AKSPWELPAG AEDAAVQAAF  60
GDDSSALLVS RLRQHQIGGD VVKSSPSSSP VMLQLSDLHR HGGGLAGAGA EESAGFSPLP  120
LFTDRSAPAR EEMEGGFRSP NSAQGGDHSM FNGFGMHGAA AVQPQFAQGG SVSPQSLGGP  180
AVSGGATTPA GGAASSAGGG AAPPRQVRQR ARRGQATDPH SIAERLRRER IAERMKSLQE  240
LVPNANKTDK ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA GMAPLVASMS SEGNSNGSSS  300
NSGGGAKGSA ATKANGNGSG ENGNGGGGLR VAENQVAKMM EEDMGTAMQY LQGKGLCLMP  360
ISLASAISSA TSSASLLSRP PPVLRHPAAT AASPAPPGQP HDASNCAAAA AAATSPASAS  420
SAGGGGDDPR STKDVGGGGG KQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	224	229	RLRRER

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT062076	8e-63	BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBank	KJ727938	8e-63	KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812266.1	0.0	transcription factor bHLH82-like isoform X1
Swissprot	Q9ZUG9	1e-70	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A2S3HL89	0.0	A0A2S3HL89_9POAL; Uncharacterized protein
STRING	Pavir.J04712.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	3e-37	LJRHL1-like 2

Link Out ? help Back to Top
Phytozome	Pahal.F02366.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]