PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F02290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 188aa MW: 21248 Da PI: 6.9754 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.4 | 3.8e-09 | 99 | 133 | 4 | 38 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlk 38 WT+ E+ +++++ +++G ++Wk I++++ ++Rt+ Pahal.F02290.1 99 WTKAEHRQFLRGLQMYGRDDWKNISKYFATTRTPL 133 *****************************999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-7 | 98 | 132 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.38E-8 | 99 | 134 | No hit | No description |
SuperFamily | SSF46689 | 1.42E-8 | 99 | 134 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.249 | 99 | 134 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 2.8E-7 | 99 | 134 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MDSTMSNGEW SASEINMVKS LKHSNIVHEI QTMFPIKEKH QVIHLYVDLM VEMIPSGTGD 60 GSYHSATTSS NLIWVMRVAQ EVPRRQPPPR MERAHTRFWT KAEHRQFLRG LQMYGRDDWK 120 NISKYFATTR TPLQPQAAAW AGDQQIGATN SSAAPVMEGD GGSRAAWFAG DQLGDFFHDQ 180 MMNMDIF* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966689.1 | 2e-59 | uncharacterized protein LOC101759880 | ||||
TrEMBL | A0A3L6PF69 | 3e-78 | A0A3L6PF69_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Da02101.1.p | 8e-69 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01200.1 | 2e-12 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F02290.1 |