PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F02213.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 530aa MW: 61863.9 Da PI: 7.4887

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F02213.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.9	3.3e-13	117	224	1	77
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk................................tekerrtraetrtgCk 63 +fYn+YAk+vGFs+r+s+++ s ++e k +f+C+keg+ ++ k++ k+ ++++ ++t+Ck Pahal.F02213.1 117 EFYNSYAKRVGFSIRTSTTRLSYLTREQNKVQFMCNKEGRGRKVKEEqgtaasdesnydeddsepeynndgsvkkkkldGGKKMKREKMQHTDCK 211 6*******************99999*********999998899******************999999987788889999** PP FAR1 64 aklkvkkekdgkwe 77 a+++vk+ +kw+ Pahal.F02213.1 212 ARIVVKLI-ADKWH 224 *****9.67775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-11	117	224	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.409	459	495	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.003	470	497	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MDLNEPPPGF DYDFLDGVDA NPSYCTQQNP AVPSLQDQNQ QTQPDVGTTL IASGGSQNVH 60 AYVVNTEEAT TVGGGIVEDI VEEVLEDVVQ EVVEEVWLTP PVPYIGQTFR TKQETREFYN 120 SYAKRVGFSI RTSTTRLSYL TREQNKVQFM CNKEGRGRKV KEEQGTAASD ESNYDEDDSE 180 PEYNNDGSVK KKKLDGGKKM KREKMQHTDC KARIVVKLIA DKWHPSLKKF LWSHKGIPNG 240 EKDFIALLHG CNLSTRRIMQ LMNEFYGSTQ LVPYEGKDVG NFRSTIRRIE KYKDVQQTLD 300 YFRELEQEDP EFFHKIKLDV EHGRLYGMRS SFVPAYYMHC FYPFLQSTQR SEGFNAVLKK 360 YMNPNMSVLH FVRQYQKIQD KCLVAQDGQD FRIDDRERRR WSRYPIKRHA STMYTKNLFY 420 RFSKEFEKTA EYDVNPEDQF QYWLLPNNIF VYGYGKRNYL VTTLEDKENY YCECKKFDRD 480 RMLCCHIMKV MTRLGVKAIP QLYILKRWTQ EAVPDNEGAA TNAHCKLIS*

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MDLNEPPPGF DYDFLDGVDA NPSYCTQQNP AVPSLQDQNQ QTQPDVGTTL IASGGSQNVH  60
AYVVNTEEAT TVGGGIVEDI VEEVLEDVVQ EVVEEVWLTP PVPYIGQTFR TKQETREFYN  120
SYAKRVGFSI RTSTTRLSYL TREQNKVQFM CNKEGRGRKV KEEQGTAASD ESNYDEDDSE  180
PEYNNDGSVK KKKLDGGKKM KREKMQHTDC KARIVVKLIA DKWHPSLKKF LWSHKGIPNG  240
EKDFIALLHG CNLSTRRIMQ LMNEFYGSTQ LVPYEGKDVG NFRSTIRRIE KYKDVQQTLD  300
YFRELEQEDP EFFHKIKLDV EHGRLYGMRS SFVPAYYMHC FYPFLQSTQR SEGFNAVLKK  360
YMNPNMSVLH FVRQYQKIQD KCLVAQDGQD FRIDDRERRR WSRYPIKRHA STMYTKNLFY  420
RFSKEFEKTA EYDVNPEDQF QYWLLPNNIF VYGYGKRNYL VTTLEDKENY YCECKKFDRD  480
RMLCCHIMKV MTRLGVKAIP QLYILKRWTQ EAVPDNEGAA TNAHCKLIS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2T7D5A3	0.0	A0A2T7D5A3_9POAL; Uncharacterized protein
STRING	Pavir.Ga01302.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2639	10	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-17	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pahal.F02213.1