PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F02181.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WOX | ||||||||
Protein Properties | Length: 256aa MW: 27666.9 Da PI: 7.3446 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48.8 | 1.2e-15 | 21 | 81 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e +++ + l + +++V++WFqNrR + ++ Pahal.F02181.1 21 RSRWAPKPEQILILESIFNSgMVNPAKDETARIRRLLerfgAVRDANVFYWFQNRRSRSRR 81 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 105 | 4.7e-34 | 20 | 82 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++ Pahal.F02181.1 20 ARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRRSRSRRR 82 789**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.42E-13 | 14 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.434 | 17 | 82 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-9 | 17 | 87 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.1E-5 | 19 | 86 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-13 | 21 | 81 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDSHHGQAHR SGEGSEPTTA RSRWAPKPEQ ILILESIFNS GMVNPAKDET ARIRRLLERF 60 GAVRDANVFY WFQNRRSRSR RRARQLQQAC SAAAQQLPNA GVVGVGHYHG ASDNTSSPFA 120 MNGHGQVRAS MMPTAAPLPS SAATAPHFFA DEVDSGDDLF AISRQMGLMS RGGDHRCGYT 180 ASDDASQLSY QPTGTTSIQV FINGAVYEVP GAGAPLDLAG TFGRDAMLVH SSGEILPVNE 240 HGVLMKSLQM GECYYL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005249 | 1e-111 | AP005249.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21. | |||
GenBank | AP014964 | 1e-111 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 1e-111 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822574.1 | 0.0 | WUSCHEL-related homeobox 10-like | ||||
Swissprot | A2YST1 | 1e-101 | WOX10_ORYSI; WUSCHEL-related homeobox 10 | ||||
TrEMBL | A0A2T8IFQ6 | 0.0 | A0A2T8IFQ6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb01029.1.p | 1e-161 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1078 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17810.2 | 3e-29 | WUSCHEL related homeobox 12 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F02181.1 |