PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F02100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Nin-like | ||||||||
Protein Properties | Length: 117aa MW: 13164.2 Da PI: 10.4645 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 25.3 | 3e-08 | 16 | 59 | 8 | 50 |
RWP-RK 8 edlskyFslpikdAAkeLgvclTvLKriCRqyGIkR.WPhRkik 50 +d++ +l +kdAA L+ ++ +L C ++G +R WP ki+ Pahal.F02100.1 16 SDVRDVLHLRLKDAAAALNASTIYLRHLCHKNGFPRgWPGKKIR 59 7899999***********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 9.625 | 1 | 83 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 5.5E-8 | 15 | 59 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MARRTTRPQA SRPEWSDVRD VLHLRLKDAA AALNASTIYL RHLCHKNGFP RGWPGKKIRY 60 LRATGKTFTL ADIMETKKMT DEDMVRIHEP VVTNHPPGEL ATLNLIDKVG MQSSSE* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008662757.1 | 6e-21 | protein RKD4 | ||||
TrEMBL | A0A3L6PM42 | 2e-78 | A0A3L6PM42_PANMI; Protein RKD4-like | ||||
STRING | Pavir.Fa01691.1.p | 5e-69 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18443 | 5 | 9 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F02100.1 |