PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F02023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26802.3 Da PI: 8.479 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.8 | 5.3e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n + rqvtfskRr g++KKA+EL +LCdaev +i+fsstg+ly+++s Pahal.F02023.1 9 KRIDNATSRQVTFSKRRSGLFKKAKELAILCDAEVGLIVFSSTGRLYDFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 77.2 | 4.3e-26 | 79 | 170 | 7 | 98 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++a+a+ +q+e+ L+++++nLq+ qR+llG++L+ L++k+Lq+Le++Le sl++iR kK++l+++qi+el +k +++en +L +k+ Pahal.F02023.1 79 TMSASAEAKLWQREAGSLRQQLHNLQEHQRQLLGQQLSGLDVKDLQNLETKLEMSLRNIRIKKDQLMIDQIQELNRKGSLMHQENIELYNKV 170 335788899*******************************************************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.4E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.674 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.27E-45 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.05E-32 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.3E-25 | 83 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.826 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGRGKIEIKR IDNATSRQVT FSKRRSGLFK KAKELAILCD AEVGLIVFSS TGRLYDFAST 60 SMKSVIERYS EAKEDHHQTM SASAEAKLWQ REAGSLRQQL HNLQEHQRQL LGQQLSGLDV 120 KDLQNLETKL EMSLRNIRIK KDQLMIDQIQ ELNRKGSLMH QENIELYNKV NLVHQENIEL 180 RRKVYGHEVN EHPESSTVRH GMLNTENEDV LVNLELSQPQ SVQRDKSETP STG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-23 | 1 | 86 | 1 | 87 | MEF2C |
5f28_B | 2e-23 | 1 | 86 | 1 | 87 | MEF2C |
5f28_C | 2e-23 | 1 | 86 | 1 | 87 | MEF2C |
5f28_D | 2e-23 | 1 | 86 | 1 | 87 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821378.1 | 1e-171 | MADS-box transcription factor 23-like | ||||
Swissprot | Q6EP49 | 1e-95 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A2S3I2P0 | 1e-170 | A0A2S3I2P0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb01587.1.p | 1e-155 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP614 | 35 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 4e-84 | AGAMOUS-like 16 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F02023.1 |
Publications ? help Back to Top | |||
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