PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F02018.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 374aa    MW: 38009.3 Da    PI: 6.0558
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F02018.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.23.9e-15146192354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+h+e+ErrRR+riNs +++Lr+llP+      +K +Ka+ L +++e++k+L
  Pahal.F02018.1 146 RSHSEAERRRRQRINSHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 192
                     78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.288143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.30E-14146195No hitNo description
PfamPF000101.6E-12146192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14147215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-15147198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-14149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.9E-6243290No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MWEAGGVHGS HEALLLQAAG SGAGGDYGHA GPALLPWLGP AAAPGFSYMA PHHQGPAFGA  60
EAAAGAFGFG GGYGGDGGGA GQLGVFGLEP PLPPPPQGLL AAAAGGGGAL PQGPRMVSGL  120
LGTLQAELGR MTAKEIMDAK ALAASRSHSE AERRRRQRIN SHLARLRSLL PNTTKTDKAS  180
LLAEVIEHVK ELKRQTSAVL GAAAEGEGEE AAARQHLVLP TESDELAVDA GEDGEGRLVV  240
RASLCCEDRA GLIPDIARAL AALRLRARRA EIATLGGRVR NVLLITTAAA DEDEEGRGQG  300
DDDEEGGGDD ADGCGARASS HHRRHELVAS IQEALRGVMD RKTASSDTSS SSGGGGGSIK  360
RQRMSGAHEQ GSL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096161e-163AK109616.1 Oryza sativa Japonica Group cDNA clone:002-137-H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820189.10.0transcription factor bHLH30-like
TrEMBLA0A2S3I2S10.0A0A2S3I2S1_9POAL; Uncharacterized protein
STRINGSi013911m1e-146(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-48bHLH family protein