PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F02005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 399aa MW: 44181.7 Da PI: 6.5082 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 8e-18 | 56 | 103 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl Pahal.F02005.1 56 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 103 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 9e-17 | 109 | 154 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l Pahal.F02005.1 109 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 154 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 47 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.932 | 51 | 103 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-30 | 53 | 150 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-14 | 55 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 56 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.04E-11 | 58 | 103 | No hit | No description |
PROSITE profile | PS51294 | 25.891 | 104 | 158 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-26 | 107 | 158 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-16 | 108 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-16 | 109 | 154 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.75E-11 | 111 | 154 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MLMIYSSSSA SCLLLILLYL SSSPSALSCQ LDFRKITHHT ALMGRSPCCE KIGLKKGPWT 60 PEEDQKLLAY IEEHGHGSWR ALPAKAGLQR CGKSCRLRWT NYLRPDIKRG KFSLQEEQTI 120 IQLHALLGNR WSAIATHLPK RTDNEIKNYW NTHLKKRLAK MGIDPVTHKS ISGTLTSTAD 180 DKSAKAAASL SHMAQWESAR LEAEARLARE SKMRTAAPTP TSLHAQQTNV PASTASPCLD 240 VLHAWQVAKI DLDSPTSTLT FTGSNSGMLP TPRINRLEVS ESNSAMWQRS DELEGEESDW 300 QFFSKHQQVL GLEGKEKEED FIGCEEEWFT GMAGVGAGFT GMLLDGSNEH DASECWGESS 360 NGQTEHSNQA SDEEDKNYWN GVLRMVNSEL PPQSPPLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 54 | 158 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728314 | 0.0 | KJ728314.1 Zea mays clone pUT6594 MYB transcription factor (MYB28) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820069.1 | 0.0 | transcription factor MYB106-like | ||||
Swissprot | Q9LE63 | 1e-112 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | A0A2T8IH05 | 0.0 | A0A2T8IH05_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa00877.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5609 | 37 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 7e-95 | myb domain protein 106 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F02005.1 |