PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F02005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 399aa    MW: 44181.7 Da    PI: 6.5082
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F02005.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28e-1856103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
   Pahal.F02005.1  56 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 103
                      79********************************************97 PP

2Myb_DNA-binding52.89e-17109154148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
   Pahal.F02005.1 109 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 154
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-2547106IPR009057Homeodomain-like
PROSITE profilePS5129417.93251103IPR017930Myb domain
SuperFamilySSF466891.5E-3053150IPR009057Homeodomain-like
SMARTSM007172.6E-1455105IPR001005SANT/Myb domain
PfamPF002491.3E-1656103IPR001005SANT/Myb domain
CDDcd001676.04E-1158103No hitNo description
PROSITE profilePS5129425.891104158IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-26107158IPR009057Homeodomain-like
SMARTSM007171.2E-16108156IPR001005SANT/Myb domain
PfamPF002494.8E-16109154IPR001005SANT/Myb domain
CDDcd001675.75E-11111154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010091Biological Processtrichome branching
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MLMIYSSSSA SCLLLILLYL SSSPSALSCQ LDFRKITHHT ALMGRSPCCE KIGLKKGPWT  60
PEEDQKLLAY IEEHGHGSWR ALPAKAGLQR CGKSCRLRWT NYLRPDIKRG KFSLQEEQTI  120
IQLHALLGNR WSAIATHLPK RTDNEIKNYW NTHLKKRLAK MGIDPVTHKS ISGTLTSTAD  180
DKSAKAAASL SHMAQWESAR LEAEARLARE SKMRTAAPTP TSLHAQQTNV PASTASPCLD  240
VLHAWQVAKI DLDSPTSTLT FTGSNSGMLP TPRINRLEVS ESNSAMWQRS DELEGEESDW  300
QFFSKHQQVL GLEGKEKEED FIGCEEEWFT GMAGVGAGFT GMLLDGSNEH DASECWGESS  360
NGQTEHSNQA SDEEDKNYWN GVLRMVNSEL PPQSPPLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26541585108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283140.0KJ728314.1 Zea mays clone pUT6594 MYB transcription factor (MYB28) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820069.10.0transcription factor MYB106-like
SwissprotQ9LE631e-112MY106_ARATH; Transcription factor MYB106
TrEMBLA0A2T8IH050.0A0A2T8IH05_9POAL; Uncharacterized protein
STRINGPavir.Fa00877.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56093758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.17e-95myb domain protein 106