PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01995.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 387aa    MW: 40414.9 Da    PI: 8.3641
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01995.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.8e-1677122147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
   Pahal.F01995.1  77 RGHWRPAEDAKLRELVALYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 122
                      899*****************************.***********996 PP
2Myb_DNA-binding52.11.5e-16130172246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +++ eE+e+l  a++ +G++ W+ Iar ++ gRt++ +k++w+ 
   Pahal.F01995.1 130 RPFSDEEEERLMAAHRFYGNK-WAMIARLFP-GRTDNAVKNHWHV 172
                      689******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7872123IPR017930Myb domain
SMARTSM007176.1E-1476125IPR001005SANT/Myb domain
SuperFamilySSF466891.24E-2777170IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-2678130IPR009057Homeodomain-like
PfamPF139219.7E-1680140No hitNo description
CDDcd001674.18E-1380121No hitNo description
PROSITE profilePS5129424.91124178IPR017930Myb domain
SMARTSM007174.9E-13128176IPR001005SANT/Myb domain
CDDcd001679.58E-11131171No hitNo description
Gene3DG3DSA:1.10.10.604.9E-20131177IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MPCSSPAPTW LLRVGYAAAA DQASSSSSSK GGGRVLTAGT TTMDTDATAG AGGGGGNAHA  60
SDHQESSSSG QSRLAARGHW RPAEDAKLRE LVALYGPQNW NLIAEKLDGR SGKSCRLRWF  120
NQLDPRISKR PFSDEEEERL MAAHRFYGNK WAMIARLFPG RTDNAVKNHW HVIMARKYRE  180
QSTAYRRRKL NQAVQRKLEA ASAAVAMPPA AGPGDAVPAT GHHHHHLLAA AAAAAAAHDA  240
AYGFADPYGF SFRHYCSFPF PPGAASAEDP PPPPPFCFFP GPGGAAAHAD RRLPWPSSPD  300
DASGGGHRYG ESPALLLPVP GGGWIEGVGV GGHHEPPHQF VLDRDGGAAA AFEGTATRPG  360
AGAHFDGAAA SASSPAFIDF LGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-33771777107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419830.0BT041983.1 Zea mays full-length cDNA clone ZM_BFb0095C08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821466.10.0transcription factor CSA-like
TrEMBLA0A2S3I2X70.0A0A2S3I2X7_9POAL; Uncharacterized protein
STRINGGRMZM2G428555_P031e-165(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.15e-68myb domain protein 117