PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F01993.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 284aa MW: 30191.2 Da PI: 5.695 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98 | 6.9e-31 | 18 | 71 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rlrWt +LH+rFv av+qLGG+++AtPk++l++m v+gLtl+h+kSHLQkYRl Pahal.F01993.2 18 ARLRWTRQLHDRFVLAVAQLGGADRATPKSVLRAMAVPGLTLYHLKSHLQKYRL 71 7****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.257 | 14 | 74 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-31 | 15 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.06E-15 | 17 | 74 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-22 | 18 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.9E-6 | 19 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.8E-16 | 136 | 175 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MASSCGGGQQ QQGGEARARL RWTRQLHDRF VLAVAQLGGA DRATPKSVLR AMAVPGLTLY 60 HLKSHLQKYR LAVSRGFITT PPGEGSNDPW SSSSEGQPDE YDEDAAAEWR GAFAAADGGA 120 AGTKEAPCDS PRSMARMQRE VQRKLQEQVE VQRHLQLRIE AQGRYLQSVL RRAEEVLADH 180 SLGSPAAMAE LSELASAVES GCLSSSSSPS PSPPRRRSAD SCITSSSSEA ESQAGTGSKR 240 PCTCAAEQPV QGKRTFLQSH EAGEADADAE AEDGSSPEID LNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-18 | 17 | 72 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-18 | 17 | 72 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-18 | 17 | 72 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-18 | 17 | 72 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968975 | 4e-76 | EU968975.1 Zea mays clone 325336 MYR1 mRNA, complete cds. | |||
GenBank | KJ726839 | 4e-76 | KJ726839.1 Zea mays clone pUT3379 G2-like transcription factor (GLK6) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822647.1 | 0.0 | myb family transcription factor PHL8-like | ||||
TrEMBL | A0A2S3I2R7 | 0.0 | A0A2S3I2R7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03046.1.p | 1e-139 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 8e-43 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F01993.2 |