PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F01833.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 216aa MW: 23274.9 Da PI: 4.9211 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.7e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT+eEde l +av+++G ++W++Ia + gR +k+c++rw ++l Pahal.F01833.1 15 KTPWTAEEDEALRRAVREHGRRNWAAIAGAVAGGRGAKSCRLRWCQHL 62 579***************************999***********9986 PP | |||||||
2 | Myb_DNA-binding | 49.1 | 1.3e-15 | 70 | 111 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+eEd ++++ + +G++ W+tIar++ gR+++ +k+rw++ Pahal.F01833.1 70 PFTPEEDARIIEQQRVHGNK-WATIARYLH-GRSDNAVKNRWNS 111 89******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.641 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-29 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-16 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-22 | 17 | 69 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.933 | 69 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.6E-13 | 70 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-21 | 70 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-9 | 70 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MAAECGGEGK ADCRKTPWTA EEDEALRRAV REHGRRNWAA IAGAVAGGRG AKSCRLRWCQ 60 HLAPELDSRP FTPEEDARII EQQRVHGNKW ATIARYLHGR SDNAVKNRWN SALRKAQQGN 120 PAAAAAQEDD DDAAEDQAAA PACLDLFPLM AGEMREVNAA DRLGVREEEA VEEDAASIDL 180 TLGSPGLSDA ELALSLGPAR PPPNRGEAVS FRLFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-27 | 9 | 115 | 1 | 106 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822537.1 | 1e-153 | transcription factor MYB77-like | ||||
Swissprot | Q9SN12 | 2e-41 | MYB77_ARATH; Transcription factor MYB77 | ||||
TrEMBL | A0A2S3I2Z6 | 1e-152 | A0A2S3I2Z6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb01519.1.p | 1e-110 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 3e-35 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F01833.1 |
Publications ? help Back to Top | |||
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