PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01738.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 497aa    MW: 52916.6 Da    PI: 9.0915
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01738.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.8e-066688123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++Cg+ F r  nL+ H r+H
  Pahal.F01738.1 66 YVCEICGQGFQRDQNLQMHRRRH 88
                    9*********************9 PP
2zf-C2H211.60.00084145166223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C  C+k +  +s++k H++t+
  Pahal.F01738.1 145 ACARCSKAYAVHSDYKAHLKTC 166
                     6*******************98 PP
3zf-C2H210.80.0015174192523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg++Fsr +++  H+ t+
  Pahal.F01738.1 174 DCGRVFSRVESFIEHQDTC 192
                     9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.76E-56588No hitNo description
Gene3DG3DSA:3.30.160.602.8E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00326688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6356688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355110108138IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.76E-5139164No hitNo description
SMARTSM00355230144171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MLSSCAPTAL PPPEAGAAPP EPFRSLQIAT TSPAGAKKKR RPAGTPDPDA EVVSLSPRTL  60
LESDRYVCEI CGQGFQRDQN LQMHRRRHKV PWKLLKREAG EAARKRVFVC PEPSCLHHDP  120
SHALGDLVGI KKHFRRKHSG HRQWACARCS KAYAVHSDYK AHLKTCGTRG HTCDCGRVFS  180
RVESFIEHQD TCNAGRPRAE TSPSPGSGGG AGFGVAASTS HQQQQRQMHA TAAAALSRTA  240
SSASPSSGGG GDLGVSPVAW PGPAMASPTA AAAAFQRFDP ALSPPTPHER PGAHSLELQL  300
MPPRGSCGAP AAAVGCCATQ HSPAVVTSPR LRADPMRLQL SIGFGGGGAR DDDSAMLAAA  360
RLKEEAREQL RLAMAEKAAA DEARAQARRQ AELAEQELAS ARRVRQQAQA ELGRAHALRD  420
HAVRQVDATL LQVTCYSCRC KFRARAAGAM SSEVASYVSS VVTEGGDAEV VDDHHHHRRQ  480
LNADDAPSHA RMMDIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-17140194357Zinc finger protein JACKDAW
5b3h_F8e-17140194357Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13640KKKRR
23641KKKRRP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067960.0AK106796.1 Oryza sativa Japonica Group cDNA clone:002-116-B04, full insert sequence.
GenBankAK1195950.0AK119595.1 Oryza sativa Japonica Group cDNA clone:002-117-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821510.10.0protein indeterminate-domain 16-like
TrEMBLA0A2S3I3X80.0A0A2S3I3X8_9POAL; Uncharacterized protein
STRINGPavir.Fb01741.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-103C2H2-like zinc finger protein