PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F01720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 209aa MW: 23540.6 Da PI: 10.0755 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00047 | 179 | 199 | 2 | 22 |
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 C++C+ +++ s+L++H+r Pahal.F01720.1 179 NCSICKANCTSESDLESHLRG 199 6******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.84E-6 | 51 | 99 | No hit | No description |
SMART | SM00451 | 0.032 | 62 | 96 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 110 | 65 | 89 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 0.0011 | 65 | 86 | No hit | No description |
SMART | SM00451 | 0.52 | 123 | 155 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 110 | 127 | 148 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 3.9E-6 | 127 | 148 | No hit | No description |
SuperFamily | SSF57667 | 5.21E-6 | 127 | 155 | No hit | No description |
SuperFamily | SSF57667 | 2.92E-10 | 165 | 207 | No hit | No description |
SMART | SM00451 | 0.017 | 175 | 207 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 0.2 | 178 | 202 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 3.1E-9 | 178 | 202 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 180 | 202 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
LELTALPHHD TSPVQQGAQL HRHIPVLPEP LLGRARIPKK KFSGLKRKTT AETSTSNKKR 60 SSGKWICALC HVNTYSEVSF KEHCAGFPHQ SNVAELEWAK EAAEPKRMAT AEANHGVQHN 120 PTARNFSICQ VKCSSELDLN NHLKGRRHQK NTLVLRRESK ETEWQSGFRE AELPVSRWNC 180 SICKANCTSE SDLESHLRGR RHQQTVKA* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973557.1 | 1e-103 | uncharacterized protein LOC101786502 | ||||
TrEMBL | A0A3L6PR45 | 1e-114 | A0A3L6PR45_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Fa00911.1.p | 1e-109 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14166 | 5 | 5 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F01720.1 |