PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F01715.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 371aa MW: 38854.2 Da PI: 7.0208

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F01715.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.7	2.4e-09	198	245	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Pahal.F01715.1 198 RHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 245 599*********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.41E-17	191	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.47E-11	192	249	No hit	No description
PROSITE profile	PS50888	15.478	194	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-16	197	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-6	198	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-11	200	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MDSFAWAAVS QTPGLAGGGA VSDGRGGGLL PPMPGFQLPP PAGLERFSVD SGLVERAGRS 60 SCFGAANGTA TTASASNITL EGASRHRSKV AGGNSSVSGV HDEAATGDCS SGGPEPDSKN 120 MKRSNEDVLA TDQAKASNAS TDSANESSRS KGVKGEENGL AAASVVAGKR KRNGSKAPDE 180 EGEEYIHVRA RKGQATNRHS LAERLRREKI SERMKLLQDL VPGCSKVTGK AVMLDEIINY 240 VQSLQRQVEF LSMKLAAVNP QLGLNIEGIL SKDLIRFPGA PPSAPIGFSL SQSGMVQEGV 300 HGVAGSNGFR TVMQGQLNER DSFREHVSQS LEQIPRALDG WFHNAGQTAY RAGIDPEHLS 360 IGPDQDAFHL *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MDSFAWAAVS QTPGLAGGGA VSDGRGGGLL PPMPGFQLPP PAGLERFSVD SGLVERAGRS  60
SCFGAANGTA TTASASNITL EGASRHRSKV AGGNSSVSGV HDEAATGDCS SGGPEPDSKN  120
MKRSNEDVLA TDQAKASNAS TDSANESSRS KGVKGEENGL AAASVVAGKR KRNGSKAPDE  180
EGEEYIHVRA RKGQATNRHS LAERLRREKI SERMKLLQDL VPGCSKVTGK AVMLDEIINY  240
VQSLQRQVEF LSMKLAAVNP QLGLNIEGIL SKDLIRFPGA PPSAPIGFSL SQSGMVQEGV  300
HGVAGSNGFR TVMQGQLNER DSFREHVSQS LEQIPRALDG WFHNAGQTAY RAGIDPEHLS  360
IGPDQDAFHL *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821587.1	0.0	transcription factor bHLH49-like
TrEMBL	A0A2S3I3F5	0.0	A0A2S3I3F5_9POAL; Uncharacterized protein
STRING	Pavir.Fb01828.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	5e-52	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.F01715.1