PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01674.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 379aa    MW: 39563.7 Da    PI: 5.064
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01674.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.3e-14139190155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++Y+k+L+
  Pahal.F01674.1 139 QRMTHIAVERNRRKQMNEYLAALRSLMPPS---YVQRGDQASIIGGAINYVKELE 190
                     79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-14137194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.05E-15137194No hitNo description
PROSITE profilePS5088816.31138189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-18138206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-12139190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-12144195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MALEAVVFSE GLFGSWAMAA APGGGGGWSW GHGESEHGGA MEGVMDLEGG AGAGGYWEVG  60
ASSSVMMQGA DHQEPDGSSA PPLPENGGGG NAAAGGGAGF SQEVAVAAAA VAMSPPPASG  120
RRKRRRTRSV KNREEVESQR MTHIAVERNR RKQMNEYLAA LRSLMPPSYV QRGDQASIIG  180
GAINYVKELE QLLQSLEARK HARRHDLSPG DGDAAAGPFA GFFTFPQYSM SARAVARSPA  240
TGNTPPADGE GPNNADADAN NGDGDHDASG SRLSSVADVE VTMVESHASL KLLSRRRPRQ  300
LLRLVAGLQR RRLTVLHLNA TSDARRMALY SLSLKVEDDC ALSSVDDIAA AVHGIVEAVD  360
REEGGAEPLG SQAEEEEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121125RKRRR
2121126RKRRRT
3139150RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822100.10.0transcription factor bHLH96-like
SwissprotQ9C7T44e-69BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2S3I3C90.0A0A2S3I3C9_9POAL; Uncharacterized protein
STRINGSi013925m1e-147(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]