PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F01666.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

ZF-HD

Protein Properties

Length: 290aa MW: 29920.3 Da PI: 6.9151

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F01666.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.5	2.8e-32	62	115	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +rY+eClkNhA+ +GghavDGCgEfm++ geeg+++al+CaACgCHRnFHR+e++ Pahal.F01666.1 62 ARYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGSIDALRCAACGCHRNFHRKESD 115 79***********************9.999******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	4.8E-29	62	114	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.0E-30	63	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-24	63	116	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.963	64	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.79E-21	213	287	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.5E-33	217	288	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	9.3E-27	226	282	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDFDEHDDGD GDEDMTPMPV TSSYDAPMQP GLGPGGGGGT PKPGDSGGGS FRTPGGGGGG 60 GARYRECLKN HAVGIGGHAV DGCGEFMAAG EEGSIDALRC AACGCHRNFH RKESDSPTGG 120 ASPADPTAAL SPAAITAYGA AAHHHPFSAY YRTPAGYLLH PHQQLAAAAA GHMQRPLALP 180 STSHSGRDEG DDMAGLIGPM MVAPMVGMSL GSGGGPSGCG GSGSGKKRFR TKFTQEQKDR 240 MLAFAEQLGW RIQKHDEAAV QQFCEEVGVK RQVLKVWMHN NKHTLGKKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	8e-30	227	284	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU963277	0.0	EU963277.1 Zea mays clone 260287 ZF-HD protein dimerisation region containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822231.1	0.0	zinc-finger homeodomain protein 2-like
Swissprot	A2YWA6	1e-121	ZHD2_ORYSI; Zinc-finger homeodomain protein 2
Swissprot	Q6ZB90	1e-121	ZHD2_ORYSJ; Zinc-finger homeodomain protein 2
TrEMBL	A0A2S3I423	0.0	A0A2S3I423_9POAL; Uncharacterized protein
STRING	GRMZM2G346920_P01	1e-146	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3950	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	1e-53	homeobox protein 21

Link Out ? help Back to Top
Phytozome	Pahal.F01666.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]