PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01622.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 250aa    MW: 26967.2 Da    PI: 7.4725
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01622.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.1e-08174214954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Pahal.F01622.1 174 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 214
                     699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-14170225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-12170224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-6174214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-6188219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048462Biological Processcarpel formation
GO:2000012Biological Processregulation of auxin polar transport
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDFDMLNSHP EAQLELMNAM LQLEQLTAFP DHHGAMMMVP STPPSPPCMQ QQQQQAHHHL  60
SSSVPHHMSA GGANGRTTYH DHHQYSSAVT SSHASCNGSA RSEYAAQDYP GYGGAGAGEG  120
NGGGDGATAV GSSAMREMIF RVAALQPVNI DPEMVRPPKR RNVRISTDPQ SVAARMRRER  180
ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKTQVQS LERAAAASGR RPADDGGGAP  240
YPDRISGQW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160RPPKRR
2174179RMRRER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269731e-155KJ726973.1 Zea mays clone pUT3674 bHLH transcription factor (bHLH113) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821983.10.0transcription factor HEC2-like
TrEMBLA0A2S3I3590.0A0A2S3I359_9POAL; Uncharacterized protein
STRINGPavir.Fa00680.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.14e-39bHLH family protein