PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F01603.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 492aa MW: 52948.8 Da PI: 9.066 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.1 | 1.3e-17 | 210 | 259 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lre+lP++ ++K +Ka+ L +++eYI+ Lq Pahal.F01603.1 210 RSKHSATEQRRRSKINDRFQILREILPQN----DQKRDKASFLLEVIEYIRFLQ 259 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-23 | 207 | 280 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.888 | 208 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.9E-19 | 208 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.46E-16 | 210 | 263 | No hit | No description |
Pfam | PF00010 | 4.2E-15 | 210 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-13 | 214 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MGLQGDKATH DFLSLYSTAK DSALPLLPES KPPPPAAHQG FFLKTHDFLQ PLERPSSQSP 60 PPRPAAEKPV RQHALPGGIG TFSISRAAAA ANQPGAAVKQ EQPPFAVWGQ PDPRGHPWSL 120 PFAARCVAVA SARPQPQQQQ QQRPPERKAG GGFMDAGSRS SGGAGFDDDD GLAARREVSS 180 ALKELSVRVE TKGGSCSGSA GTDQLPNTPR SKHSATEQRR RSKINDRFQI LREILPQNDQ 240 KRDKASFLLE VIEYIRFLQE KVQKYEVSNP EWNQENAKIM PWSNIYFRSS WKNSQNKDEI 300 NGDLASDPSQ VIKNGSSPRF PFAAKPEDHN NAGAFEIASG AQELAEPKGC VPFKQAETPS 360 NITNTVASQQ PGPLTNSSPS DDGAAPNGML SNPELAIDEG TISLSSQYSQ GLLTTLNLAL 420 QNSGIDLSQA SISVQINLGK RAIKRSAPGL NSTSKDLITQ ASRDQEIGHQ LGSGDGAREH 480 SQATKRHKSD R* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070237 | 1e-160 | AK070237.1 Oryza sativa Japonica Group cDNA clone:J023047A01, full insert sequence. | |||
GenBank | AK100183 | 1e-160 | AK100183.1 Oryza sativa Japonica Group cDNA clone:J023030J22, full insert sequence. | |||
GenBank | HQ858865 | 1e-160 | HQ858865.1 Oryza sativa Japonica Group isolate UT1674 bHLH transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822754.1 | 0.0 | transcription factor BIM1-like isoform X1 | ||||
TrEMBL | A0A2S3I3G6 | 0.0 | A0A2S3I3G6_9POAL; Uncharacterized protein | ||||
STRING | Si013622m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP762 | 37 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 4e-55 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F01603.1 |