PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F01560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YC | ||||||||
Protein Properties | Length: 210aa MW: 22355.5 Da PI: 5.9297 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 167 | 2.4e-52 | 70 | 173 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql+ fw++q +e +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaav+rt++fdfl Pahal.F01560.1 70 QLNLFWAEQfreVEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAVARTEVFDFL 164 7999****998899********************************************************************************* PP NF-YC 93 vdivprdel 101 vdivprde Pahal.F01560.1 165 VDIVPRDEA 173 *******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.47E-30 | 51 | 164 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-21 | 92 | 155 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.1E-36 | 93 | 170 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MEPKSNTPPP APVMGAPVAY PPPPGAAYAA GPYAHAPAAA LYPPPPPPPP PHPSAAAAQQ 60 QQLGPAAQQQ LNLFWAEQFR EVEATTDFKN HNLPLARIKK IMKADEDVRM IAAEAPVVFA 120 RACEMFILEL THRGWAHAEE NKRRTLQKSD IAAAVARTEV FDFLVDIVPR DEAKDAEAAA 180 AAGMGAGIPH PTAGMPAADP MGYYYVQPQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-57 | 78 | 170 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 148 | RRTLQKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974115 | 1e-167 | EU974115.1 Zea mays clone 440194 nuclear transcription factor Y subunit C-2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821081.1 | 1e-148 | nuclear transcription factor Y subunit C-6-like | ||||
Swissprot | Q9XE33 | 2e-77 | NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6 | ||||
TrEMBL | A0A2S3I4B7 | 1e-146 | A0A2S3I4B7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb01850.1.p | 8e-92 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3856 | 36 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 1e-58 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F01560.1 |
Publications ? help Back to Top | |||
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