PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F01513.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 923aa MW: 100854 Da PI: 5.0143 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59 | 1.1e-18 | 50 | 96 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l +av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l Pahal.F01513.1 50 KGNWTPEEDAILSRAVQTYQGKNWKKIAECFP-DRTDVQCLHRWQKVL 96 79******************************.************986 PP | |||||||
2 | Myb_DNA-binding | 62.2 | 1.1e-19 | 102 | 148 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++v+ v+++G++ W+tIa+ ++ gR +kqc++rw+++l Pahal.F01513.1 102 KGPWSKEEDEIIVQMVNKYGPKKWSTIAQALP-GRIGKQCRERWHNHL 148 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 47.3 | 4.7e-15 | 154 | 196 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++++G++ W+ + ++ gRt++ +k++w+ Pahal.F01513.1 154 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNAIKNHWN 196 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.677 | 45 | 96 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.21E-19 | 48 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-17 | 49 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-16 | 50 | 96 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-24 | 51 | 104 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.25E-15 | 52 | 96 | No hit | No description |
PROSITE profile | PS51294 | 31.92 | 97 | 152 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.23E-31 | 99 | 195 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-18 | 101 | 150 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.66E-16 | 104 | 148 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-27 | 105 | 151 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.9E-18 | 105 | 165 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-21 | 152 | 203 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.654 | 153 | 203 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-14 | 153 | 201 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.42E-11 | 156 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 923 aa Download sequence Send to blast |
MASDKAKVAK KGGEDPGLPP APREGENSHE PQRQRSLNGR TTGPTRRSTK GNWTPEEDAI 60 LSRAVQTYQG KNWKKIAECF PDRTDVQCLH RWQKVLNPEL VKGPWSKEED EIIVQMVNKY 120 GPKKWSTIAQ ALPGRIGKQC RERWHNHLNP AINKEAWTQE EEITLIHAHR MYGNKWAELT 180 KFLPGRTDNA IKNHWNSSVK KKVDSYISSG LLSQAPCLPV IECPAQCNSL SAMNLQNNGD 240 SGCNAHNTNV ALNCELQVNV DANKGEAHDS HSSMCQGACY TSIEAVGSAL PDGHHHLSSS 300 FSQRTDLQMD VNEGSGNSVF ADDQTLCSTS NQEKSMVPYG VVQEMPVSVL SSVSEAEQTL 360 HLISDADSLK SELWKDVSLQ ILISGDTIDG DSSSGLNQLP DTSETDTNFL AQPYPLHTSN 420 PSSVMETVYE QSTLETISPS SICLHSLPDA PENRSEPIEM PDSEAEMITC SNNSFCDAEQ 480 SAKPGSSDDR PGAFTMTESI TNCRSQQSTD AEEPVASTAK ERLPKDMDTV PDEKKGEGAL 540 FYEPPRFPGL DVPFISCDLV TSADMQEFSP LGIRQWMRST MNVPTPLRLW GSPTHDESPG 600 VLKSAAESFP CAPSIMKKRQ RGLLSPTPDK RIEKKSGIAK EMTDISYMIA ATCSMNATKD 660 EATAPESAAC AEQYSSFKHL DEKENFNGAP EQARDPQNGG NEQGGQQCSS LNVANPNTDL 720 PDNLQPVGIL VEHNCNDITA ADHGAKPESL SFCKEAVSSK PKPAELVVEK SSPCINADYE 780 YVNLLADTPG VKRGLESPSA WKSPWYIDMH MHFQGFVSPA DRTYDALGLV KQISKQSAAA 840 AVEACEVLAS GSRISDKENK ENRDDKEPGT RKSQTKIMAE ARVLDFDEYS TPAKAADKRL 900 GSCLGRSVSS PILSSPNLRS FR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-67 | 50 | 203 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-67 | 50 | 203 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087506 | 1e-152 | BT087506.1 Zea mays full-length cDNA clone ZM_BFb0098J09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814765.1 | 0.0 | transcription factor MYB3R-1-like | ||||
TrEMBL | A0A2S3HZG7 | 0.0 | A0A2S3HZG7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea00087.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 1e-104 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F01513.1 |