PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01504.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 327aa    MW: 34378.2 Da    PI: 5.7739
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01504.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.000691992361254
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +r+ +++  L +++ +      +K + a++L++++ YI+ L
  Pahal.F01504.2 199 RKERLGDRITALHQIVSPF-----GKTDTASVLQETICYIRFL 236
                     6678889999999999998.....8***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.763187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.92E-5197241No hitNo description
Gene3DG3DSA:4.10.280.101.2E-5197243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-9197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MMGGGEFKSS LLQQMMWSGG TDSKNMMSSL MPCAEEQEAS NKIPPCLSSS SSVLLPQHLL  60
QISSGQLPPE VNSTTTSLAT SSDLHDGRES NMPESWSQLL LGRLVGDHER YSAATALLSK  120
RLEEAGPMPQ AAAAAYNLYG HGGGEEIQQT SGTNKSQAPE VKNHHSDNSS EGNSTASGSA  180
PKKARVQTSS SAQSTLKVRK ERLGDRITAL HQIVSPFGKT DTASVLQETI CYIRFLLSQI  240
EALSFPYLGG HGNGNSMQQH TVATEEVNGG GGDDEGSSKD LRSRGLCLVP VSCTSHLAGD  300
DSGASDFWAV AAAPPPPPPL GGIIWR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0337201e-106BT033720.1 Zea mays full-length cDNA clone ZM_BFc0123B16 mRNA, complete cds.
GenBankBT0403171e-106BT040317.1 Zea mays full-length cDNA clone ZM_BFc0080O08 mRNA, complete cds.
GenBankBT0414191e-106BT041419.1 Zea mays full-length cDNA clone ZM_BFc0163C07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818136.10.0transcription factor bHLH133-like isoform X3
TrEMBLA0A2S3HZA20.0A0A2S3HZA2_9POAL; Uncharacterized protein
STRINGPavir.Ea00082.1.p1e-177(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-40bHLH family protein