PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F01504.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 360aa MW: 37846 Da PI: 5.9878

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F01504.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11	0.00078	232	269	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +r+ +++ L +++ + +K + a++L++++ YI+ L Pahal.F01504.1 232 RKERLGDRITALHQIVSPF-----GKTDTASVLQETICYIRFL 269 6678889999999999998.....8***************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.763	220	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-5	230	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.02E-9	230	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.45E-5	230	274	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MMGGGEFKSS LLQQMMWSGG TDSKNMMSSL MPCAEEQEAS NKIPPCLSSS SSVLLPQHLL 60 QISSGQLPPE VNSTTTSLAT SSDLHDGRES NMPESWSQLL LGRLVGDHER YSAATALLSK 120 RLEEAGPMPQ AAAAAYNLYG HGGGEEIQQT SGTNKSQVSQ QTLLASSPRS CITTSLGSNR 180 LDFSNSTSVQ APEVKNHHSD NSSEGNSTAS GSAPKKARVQ TSSSAQSTLK VRKERLGDRI 240 TALHQIVSPF GKTDTASVLQ ETICYIRFLL SQIEALSFPY LGGHGNGNSM QQHTVATEEV 300 NGGGGDDEGS SKDLRSRGLC LVPVSCTSHL AGDDSGASDF WAVAAAPPPP PPLGGIIWR*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MMGGGEFKSS LLQQMMWSGG TDSKNMMSSL MPCAEEQEAS NKIPPCLSSS SSVLLPQHLL  60
QISSGQLPPE VNSTTTSLAT SSDLHDGRES NMPESWSQLL LGRLVGDHER YSAATALLSK  120
RLEEAGPMPQ AAAAAYNLYG HGGGEEIQQT SGTNKSQVSQ QTLLASSPRS CITTSLGSNR  180
LDFSNSTSVQ APEVKNHHSD NSSEGNSTAS GSAPKKARVQ TSSSAQSTLK VRKERLGDRI  240
TALHQIVSPF GKTDTASVLQ ETICYIRFLL SQIEALSFPY LGGHGNGNSM QQHTVATEEV  300
NGGGGDDEGS SKDLRSRGLC LVPVSCTSHL AGDDSGASDF WAVAAAPPPP PPLGGIIWR*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818133.1	0.0	transcription factor bHLH68-like isoform X1
TrEMBL	A0A2S3HZI2	0.0	A0A2S3HZI2_9POAL; Uncharacterized protein
STRING	Pavir.Ea00082.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2167	8	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-41	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.F01504.1