PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F01348.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 167aa MW: 17427.7 Da PI: 10.4927 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.3 | 6.2e-21 | 31 | 81 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 + +GVr ++ +gr++AeIrdp r +r++lg+f+t+eeAa+a++aa+++l+g+ Pahal.F01348.1 31 RLRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTPEEAARAYDAAARRLRGP 81 679******.**********8...2.35**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.91E-17 | 30 | 90 | No hit | No description |
Pfam | PF00847 | 6.5E-15 | 30 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-21 | 31 | 89 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.565 | 31 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-31 | 31 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-10 | 32 | 43 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-30 | 33 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-10 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MAPRRPPSPA GSSSSGGGGS AERAAAEQQP RLRGVRKRPW GRYAAEIRDP ARKARVWLGT 60 FDTPEEAARA YDAAARRLRG PRAATNYPAA PAADEPCPPS SSAADSLPTT AAPARSPYLT 120 ATVPAAPALR QFLPLKGEEE RSRCFPGSSV GLGLDLNLPP PAEMVM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-20 | 33 | 88 | 7 | 63 | ATERF1 |
3gcc_A | 1e-20 | 33 | 88 | 7 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM493723 | 2e-76 | AM493723.1 Saccharum officinarum mRNA for ethylene responsive transcription factor (ERF3 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821653.1 | 1e-111 | ethylene-responsive transcription factor 8-like | ||||
TrEMBL | A0A2S3I122 | 1e-109 | A0A2S3I122_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7D4Q6 | 1e-109 | A0A2T7D4Q6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa01728.1.p | 2e-45 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14446 | 10 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 9e-18 | ERF domain protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F01348.1 |